Structure #200584
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | + |
| Position | 102,843,992 - 102,844,110 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 83.59 |
| Columns | 120 |
| Mean single MFE | -47.03 |
| Consensus MFE | -32.1 |
| Combinations/base pair | 46 / 37 = 1.24 |
| SCI | 0.68 |
| z-score | -3.89 |
| RNA class probability | 0.996209 |
This structure is part of cluster 111383
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.59 Mean single sequence MFE: -47.02 Consensus MFE: -32.10 Energy contribution: -33.73 Covariance contribution: 1.63 Mean z-score: -3.89 Structure conservation index: 0.68 SVM decision value: 2.67 SVM RNA-class probability: 0.996209 Prediction: RNA ###################################################################### >hg17.chrX/102843992-102844110 GGGAGAAAGGGAACAGUGGGGUCACUGACCUUCUUCUCCCCCCAUCCCCAGGCUUCAGAGACUUUCUUUACUAGAAAAGUCUAAGAGUUUGGGGGUGGGGAGGAGUUGGAUAGGCAGA .((((((.((...(((((....))))).))))))))(((((((((((((((((((...(((((((((.....)).)))))))..)))))))))))))))).)))(((.....)))... ( -57.00) >canFam1.chrX/80234593-80234711 GGGAGAGAAGGAACAGAGGGGUCACUGACCUUCUCCUCCCCCCACCCUCAGGCUUCAGAAACCUUCUUUACUAGAAGACUUUAAGAGUUUGGGGGUAGGGAAAAGUUGGAUAGACAGA (((((((((((..(((........))).)))))).)))))(((((((((((((((..(((..(((((.....)))))..)))..)))))))))))).)))....(((.....)))... ( -47.90) >mm5.chrX/126836011-126836128 GGAAGAGAGAGGGAACAGUGGGGUCACUGACCUCCCCUCCCCCACCCCAGACUUCAGAGACCUUCUUUACUAGAAGAGUCUAAGAGUUGGAGGGUGGAGAGGAGUUAAAAGGGCAGA ........((((...(((((....))))).))))..((((((((((((.(((((...(((((((((.....))))).))))..))))).).)))))).).))))............. ( -44.80) >rn3.chrX/124568392-124568508 GGAGAGAGAAGUAACAGUCGGGUCACUGACCUCCCCUCCCCAAUCCCAGACUUCAGAGACCUUCUUUACUAGAAGAGUCUAAGAGUUGGAGGGUGGAGAGGAGUUAAAAGGGCAGA ..........((....(((((....)))))((((.((((((..(((..(((((...(((((((((.....))))).))))..)))))))).)).)))).))))........))... ( -38.40) >consensus GG__GAGAGAAGGAACAGUGGGGUCACUGACCUCC__CCCCCCCCA_CCCCAGACUUCAGAGACCUUCUUUACUAGAAGAGUCUAAGAGUUGGAGGGUGGAGAGGAGUUAAAAAGGCAGA .............(((...((((((...))))))...(((((((.((((((((((((...(((((((((.....))))).))))..))))))))))))))))))).)))........... (-32.10 = -33.73 + 1.63)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
