Structure #200587

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	102,843,992 - 102,844,110
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	83.59
Columns	120
Mean single MFE	-43.45
Consensus MFE	-30.73
Combinations/base pair	45 / 35 = 1.29
SCI	0.71
z-score	-4.28
RNA class probability	0.997265

This structure is part of cluster 111383

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.59
 Mean single sequence MFE: -43.45
 Consensus MFE: -30.73
 Energy contribution: -30.98
 Covariance contribution:   0.25
 Mean z-score:  -4.28
 Structure conservation index:   0.71
 SVM decision value:   2.83
 SVM RNA-class probability: 0.997265
 Prediction: RNA

######################################################################

>hg17.chrX/102844110-102843992
UCUGCCUAUCCAACUCCUCCCCACCCCCAAACUCUUAGACUUUUCUAGUAAAGAAAGUCUCUGAAGCCUGGGGAUGGGGGGAGAAGAAGGUCAGUGACCCCACUGUUCCCUUUCUCCC
.............((((.(((((.(((((..(((..((((((((........))))))))..).))..))))).)))))))))..(((((.(((((....)))))...)))))..... ( -46.30)
>canFam1.chrX/80234711-80234593
UCUGUCUAUCCAACUUUUCCCUACCCCCAAACUCUUAAAGUCUUCUAGUAAAGAAGGUUUCUGAAGCCUGAGGGUGGGGGGAGGAGAAGGUCAGUGACCCCUCUGUUCCUUCUCUCCC
..................((((((((.((..((.(..((..(((((.....)))))..))..).))..)).))))))))((..(((((((.(((.(....).)))..)))))))..)) ( -41.60)
>mm5.chrX/126836128-126836011
UCUGCCCUUUUAACUCCUCUCCACCCUCCAACUCUUAGACUCUUCUAGUAAAGAAGGUCUCUGAAGUCUGGGGUGGGGGAGGGGAGGUCAGUGACCCCACUGUUCCCUCUCUCUUCC
.............((((.(.(((((((...((((..((((.(((((.....)))))))))..).)))..))))))))))))((((((.(((((....)))))...))))))...... ( -46.80)
>rn3.chrX/124568508-124568392
UCUGCCCUUUUAACUCCUCUCCACCCUCCAACUCUUAGACUCUUCUAGUAAAGAAGGUCUCUGAAGUCUGGGAUUGGGGAGGGGAGGUCAGUGACCCGACUGUUACUUCUCUCUCC
.............(((((((((.((.((((((((..((((.(((((.....)))))))))..).))).))))...)))))))))))...((((((......))))))......... ( -39.10)
>consensus
UCUGCCCAUCCAACUCCUCCCCACCCCCAAACUCUUAGACUCUUCUAGUAAAGAAGGUCUCUGAAGCCUGGGG_UGGGGGAAG__GAAGGUCAGUGACCCCACUGUUCCCUCUCUC__CC
...............(((((((..(((((.((((..((((.(((((.....)))))))))..).))).)))))...)))))))..(((((.(((((....)))))...)))))....... (-30.73 = -30.98 +   0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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