Structure #200589

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	102,844,030 - 102,844,150
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.5
Columns	120
Mean single MFE	-42.33
Consensus MFE	-30.62
Combinations/base pair	52 / 38 = 1.37
SCI	0.72
z-score	-3.13
RNA class probability	0.997945

This structure is part of cluster 111383

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.50
 Mean single sequence MFE: -42.33
 Consensus MFE: -30.62
 Energy contribution: -30.38
 Covariance contribution:  -0.25
 Mean z-score:  -3.13
 Structure conservation index:   0.72
 SVM decision value:   2.97
 SVM RNA-class probability: 0.997945
 Prediction: RNA

######################################################################

>hg17.chrX/102844030-102844150
CCCCCAUCCCCAGGCUUCAGAGACUUUCUUUACUAGAAAAGUCUAAGAGUUUGGGGGUGGGGAGGAGUUGGAUAGGCAGAGAAGGAAAAUGGCAGUACUGUUUACUUCUAAGCUCCUUUU
.((((((((((((((((...(((((((((.....)).)))))))..))))))))))))))))(((((((..........(((((..((((((.....)))))).))))).)))))))... ( -53.60)
>canFam1.chrX/80234631-80234751
CCCCCACCCUCAGGCUUCAGAAACCUUCUUUACUAGAAGACUUUAAGAGUUUGGGGGUAGGGAAAAGUUGGAUAGACAGAGUAGGAAAAUGGCAGCACUGUUUAUUUCCAAGCUCCUUUU
.(((.((((((((((((..(((..(((((.....)))))..)))..)))))))))))).)))(((((((((((((((((.((.(........).)).)))))))..)))))....))))) ( -41.20)
>mm5.chrX/126836049-126836168
CCCCCACCCCAGACUUCAGAGACCUUCUUUACUAGAAGAGUCUAAGAGUUGGAGGGUGGAGAGGAGUUAAAAGGGCAGAGAAUGAAGAUAGGAGUCCUGUUUACUUCCCAGCACAUUUU
...(((((((.(((((...(((((((((.....))))).))))..))))).).)))))).(.(((((....(((((.................)))))....))))).).......... ( -37.83)
>rn3.chrX/124568429-124568548
CCCCAAUCCCAGACUUCAGAGACCUUCUUUACUAGAAGAGUCUAAGAGUUGGAGGGUGGAGAGGAGUUAAAAGGGCAGAGAAUGAAGACGGGGGUGCUGUUCAUUCCCCAGUGCCUUUU
..(((..(((.(((((...(((((((((.....))))).))))..)))))...))))))..........(((((((((.((((((..((((.....)))))))))).)...)))))))) ( -36.70)
>consensus
CCCCCA_CCCCAGACUUCAGAGACCUUCUUUACUAGAAGAGUCUAAGAGUUGGAGGGUGGAGAGGAGUUAAAAAGGCAGAGAAGGAAAAUGGCAGUACUGUUUACUUCCAAGCUCCUUUU
.((((((((((((((((...(((((((((.....))))).))))..)))))))))))))))).(((((.....((((((.(..(........)..).)))))))))))............ (-30.62 = -30.38 +  -0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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