Structure #200591

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	102,844,030 - 102,844,150
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.5
Columns	120
Mean single MFE	-35.23
Consensus MFE	-21.15
Combinations/base pair	46 / 36 = 1.28
SCI	0.6
z-score	-2.45
RNA class probability	0.914046

This structure is part of cluster 111383

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.50
 Mean single sequence MFE: -35.23
 Consensus MFE: -21.15
 Energy contribution: -23.65
 Covariance contribution:   2.50
 Mean z-score:  -2.45
 Structure conservation index:   0.60
 SVM decision value:   1.09
 SVM RNA-class probability: 0.914046
 Prediction: RNA

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>hg17.chrX/102844150-102844030
AAAAGGAGCUUAGAAGUAAACAGUACUGCCAUUUUCCUUCUCUGCCUAUCCAACUCCUCCCCACCCCCAAACUCUUAGACUUUUCUAGUAAAGAAAGUCUCUGAAGCCUGGGGAUGGGGG
....(((((..(((((.(((((....))....))).)))))..))...))).......(((((.(((((..(((..((((((((........))))))))..).))..))))).))))). ( -37.10)
>canFam1.chrX/80234751-80234631
AAAAGGAGCUUGGAAAUAAACAGUGCUGCCAUUUUCCUACUCUGUCUAUCCAACUUUUCCCUACCCCCAAACUCUUAAAGUCUUCUAGUAAAGAAGGUUUCUGAAGCCUGAGGGUGGGGG
...(((((.(((((..((.((((.(..(........)..).)))).))))))))))))((((((((.((..((.(..((..(((((.....)))))..))..).))..)).)))))))). ( -33.10)
>mm5.chrX/126836168-126836049
AAAAUGUGCUGGGAAGUAAACAGGACUCCUAUCUUCAUUCUCUGCCCUUUUAACUCCUCUCCACCCUCCAACUCUUAGACUCUUCUAGUAAAGAAGGUCUCUGAAGUCUGGGGUGGGGG
((((.(.((.(((((......(((...))).......))))).))).)))).......(((((((((...((((..((((.(((((.....)))))))))..).)))..))))))))). ( -35.52)
>rn3.chrX/124568548-124568429
AAAAGGCACUGGGGAAUGAACAGCACCCCCGUCUUCAUUCUCUGCCCUUUUAACUCCUCUCCACCCUCCAACUCUUAGACUCUUCUAGUAAAGAAGGUCUCUGAAGUCUGGGAUUGGGG
((((((...(((((((((((..((......)).))))))))))).)))))).......(((((..(((..((((..((((.(((((.....)))))))))..).)))..)))..))))) ( -35.20)
>consensus
AAAAGGAGCUGGGAAAUAAACAGUACUCCCAUCUUCAUUCUCUGCCCAUCCAACUCCUCCCCACCCCCAAACUCUUAGACUCUUCUAGUAAAGAAGGUCUCUGAAGCCUGGGG_UGGGGG
..((((((..(((.((((.....)))).)))..))))))...................(((((.(((((.((((..((((.(((((.....)))))))))..).))).))))).))))). (-21.15 = -23.65 +   2.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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