Structure #200982

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	106,809,229 - 106,809,342
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.58
Columns	120
Mean single MFE	-53.43
Consensus MFE	-38.45
Combinations/base pair	53 / 34 = 1.56
SCI	0.72
z-score	-3.12
RNA class probability	0.999851

This structure is part of cluster 111626

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.58
 Mean single sequence MFE: -53.43
 Consensus MFE: -38.45
 Energy contribution: -35.95
 Covariance contribution:  -2.50
 Mean z-score:  -3.12
 Structure conservation index:   0.72
 SVM decision value:   4.25
 SVM RNA-class probability: 0.999851
 Prediction: RNA

######################################################################

>hg17.chrX/106809229-106809342
AAAGUGCUCAAGGAGCCUCAGGGCCAGCCUGGGCUGGCUCGGCUGUGGGGGCGGGAGGAAAUUCACGGUCCUGAGUGUCUUCAGGAGCUCCCAGGCCCUGAGGGAAGCCUGGA
.......((.(((..((((((((((((((.(((....))))))).(((((((..(((((.(((((......))))).)))))....)))))))))))))))))....))).)) ( -57.80)
>mm5.chrX/130590921-130591041
AAAGUGUUCAAGGAGCCUUAGGGUCAGCCUAAGCUGGCUCUGCUGUGGAAGCAGCGAGAUGUUCCCUGCCCUGAGUCCUGAGUGGCUUUGGGGGCUCUUGAGCUCUGAGGGAAGACUGGA
..(((.(((..(((((...(((((((((....)))))))))(((((....)))))((((.((((((.(((((.(....).)).)))...))))))))))..)))))....))).)))... ( -51.80)
>rn3.chrX/128453461-128453581
AAAGUGCUCAAGGAGCCUCAGGGCCAGCCUAAGCUGGCUCUGCUGUGAAAGCAGGAAGAUGUACCCUGCCCUGAGUCCUGAGUGGCUUUGGGGGCUUUUGAGCUCUGAGGGAAAACUGGA
..((.(((((((.((((.((((((((((....))))))))))((((....)))).........(((.(((((.(....).)).)))...)))))))))))))).)).............. ( -51.70)
>canFam1.chrX/84324848-84324960
AAACUGCUCAGAGAGUCUGAGGGCCAGCCUGGGCUGGCUGGGCUGUGGAGGCAAGAGGAAGUUCUUGGCCCUGAGUGCCUCAGGGGCUCCUGGGCUCUGAGAGAAGGCUGGA
......(((((.....)))))..(((((((...((..(.(((((..((((.((((((....)))))).(((((((...))))))).))))..))))).)..)).))))))). ( -52.40)
>consensus
AAAGUGCUCAAGGAGCCUCAGGGCCAGCCUAAGCUGGCUCGGCUGUGGAAGCAGGAAGAAGUUCCC_______AGUCCUGAGUGGCUUCAGGGGCUCCUGAGCUCUGAGGGAAGACUGGA
...............(((((((((((((....))))))...(((.(((((((.((((....))))..........(((((((....)))))))))))))))))))))))).......... (-38.45 = -35.95 +  -2.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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