Structure #200986

Summary

Genome/Assembly hg17
Chromosome/Contig chrX
Strand -
Position 106,809,229 - 106,809,342
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 76.58
Columns 120
Mean single MFE -42.62
Consensus MFE -25.01
Combinations/base pair 30 / 26 = 1.15
SCI 0.59
z-score -2.98
RNA class probability 0.998695

This structure is part of cluster 111626

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.58
 Mean single sequence MFE: -42.62
 Consensus MFE: -25.01
 Energy contribution: -26.95
 Covariance contribution:   1.94
 Mean z-score:  -2.98
 Structure conservation index:   0.59
 SVM decision value:   3.19
 SVM RNA-class probability: 0.998695
 Prediction: RNA

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>hg17.chrX/106809342-106809229
UCCAGGCUUCCCUCAGGGCCUGGGAGCUCCUGAAGACACUCAGGACCGUGAAUUUCCUCCCGCCCCCACAGCCGAGCCAGCCCAGGCUGGCCCUGAGGCUCCUUGAGCACUUU
((.(((....((((((((((((((.((((((((......))))))..(.((......)).))).))))......((((......))))))))))))))..))).))....... ( -46.70)
>mm5.chrX/130591041-130590921
UCCAGUCUUCCCUCAGAGCUCAAGAGCCCCCAAAGCCACUCAGGACUCAGGGCAGGGAACAUCUCGCUGCUUCCACAGCAGAGCCAGCUUAGGCUGACCCUAAGGCUCCUUGAACACUUU
.................(.((((((((((((..((((.....)).))..))).((((.....(((((((......)))).))).((((....)))).))))..)))).))))).)..... ( -37.00)
>rn3.chrX/128453581-128453461
UCCAGUUUUCCCUCAGAGCUCAAAAGCCCCCAAAGCCACUCAGGACUCAGGGCAGGGUACAUCUUCCUGCUUUCACAGCAGAGCCAGCUUAGGCUGGCCCUGAGGCUCCUUGAGCACUUU
.................((((((.(((((((..((((.....)).))..)))((((..........(((((.....))))).((((((....)))))))))).))))..))))))..... ( -44.30)
>canFam1.chrX/84324960-84324848
UCCAGCCUUCUCUCAGAGCCCAGGAGCCCCUGAGGCACUCAGGGCCAAGAACUUCCUCUUGCCUCCACAGCCCAGCCAGCCCAGGCUGGCCCUCAGACUCUCUGAGCAGUUU
.........(((((((((....((((.(((((((...))))))).(((((......))))).))))........((((((....)))))).........))))))).))... ( -42.50)
>consensus
UCCAGUCUUCCCUCAGAGCCCAAGAGCCCCCAAAGCCACUCAGGACC_______GGGAACAUCCUCCUGCCUCCACAGCAGAGCCAGCCCAGGCUGGCCCUGAGGCUCCUUGAGCACUUU
.................((((((((((...........((((((......................((((.......)))).((((((....)))))))))))))))).))))))..... (-25.01 = -26.95 +   1.94) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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