Structure #200986
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | - |
| Position | 106,809,229 - 106,809,342 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 76.58 |
| Columns | 120 |
| Mean single MFE | -42.62 |
| Consensus MFE | -25.01 |
| Combinations/base pair | 30 / 26 = 1.15 |
| SCI | 0.59 |
| z-score | -2.98 |
| RNA class probability | 0.998695 |
This structure is part of cluster 111626
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.58 Mean single sequence MFE: -42.62 Consensus MFE: -25.01 Energy contribution: -26.95 Covariance contribution: 1.94 Mean z-score: -2.98 Structure conservation index: 0.59 SVM decision value: 3.19 SVM RNA-class probability: 0.998695 Prediction: RNA ###################################################################### >hg17.chrX/106809342-106809229 UCCAGGCUUCCCUCAGGGCCUGGGAGCUCCUGAAGACACUCAGGACCGUGAAUUUCCUCCCGCCCCCACAGCCGAGCCAGCCCAGGCUGGCCCUGAGGCUCCUUGAGCACUUU ((.(((....((((((((((((((.((((((((......))))))..(.((......)).))).))))......((((......))))))))))))))..))).))....... ( -46.70) >mm5.chrX/130591041-130590921 UCCAGUCUUCCCUCAGAGCUCAAGAGCCCCCAAAGCCACUCAGGACUCAGGGCAGGGAACAUCUCGCUGCUUCCACAGCAGAGCCAGCUUAGGCUGACCCUAAGGCUCCUUGAACACUUU .................(.((((((((((((..((((.....)).))..))).((((.....(((((((......)))).))).((((....)))).))))..)))).))))).)..... ( -37.00) >rn3.chrX/128453581-128453461 UCCAGUUUUCCCUCAGAGCUCAAAAGCCCCCAAAGCCACUCAGGACUCAGGGCAGGGUACAUCUUCCUGCUUUCACAGCAGAGCCAGCUUAGGCUGGCCCUGAGGCUCCUUGAGCACUUU .................((((((.(((((((..((((.....)).))..)))((((..........(((((.....))))).((((((....)))))))))).))))..))))))..... ( -44.30) >canFam1.chrX/84324960-84324848 UCCAGCCUUCUCUCAGAGCCCAGGAGCCCCUGAGGCACUCAGGGCCAAGAACUUCCUCUUGCCUCCACAGCCCAGCCAGCCCAGGCUGGCCCUCAGACUCUCUGAGCAGUUU .........(((((((((....((((.(((((((...))))))).(((((......))))).))))........((((((....)))))).........))))))).))... ( -42.50) >consensus UCCAGUCUUCCCUCAGAGCCCAAGAGCCCCCAAAGCCACUCAGGACC_______GGGAACAUCCUCCUGCCUCCACAGCAGAGCCAGCCCAGGCUGGCCCUGAGGCUCCUUGAGCACUUU .................((((((((((...........((((((......................((((.......)))).((((((....)))))))))))))))).))))))..... (-25.01 = -26.95 + 1.94)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
