Structure #200994

Summary

Genome/Assembly hg17
Chromosome/Contig chrX
Strand +
Position 106,809,302 - 106,809,415
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 83.26
Columns 120
Mean single MFE -45.5
Consensus MFE -31.59
Combinations/base pair 46 / 35 = 1.31
SCI 0.69
z-score -1.79
RNA class probability 0.724959

This structure is part of cluster 111626

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.26
 Mean single sequence MFE: -45.50
 Consensus MFE: -31.59
 Energy contribution: -30.53
 Covariance contribution:  -1.06
 Mean z-score:  -1.79
 Structure conservation index:   0.69
 SVM decision value:   0.41
 SVM RNA-class probability: 0.724959
 Prediction: RNA

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>hg17.chrX/106809302-106809415
AGUGUCUUCAGGAGCUCCCAGGCCCUGAGGGAAGCCUGGAGCUCCUGGGGCAAGUGCUGCCCUCGGGAUCUUCUGCCGAGACCGGGCCAGCUUCCUAAACUAACUCCCAGACU
...((((.((((((((((.((((((....))..))))))))))))))(((..(((((((.((.(((..((.......))..))))).)))).......)))....))))))). ( -50.11)
>mm5.chrX/130591001-130591114
AGUGGCUUUGGGGGCUCUUGAGCUCUGAGGGAAGACUGGAGCUCCUAAGGCAAGUGCUGCCCUCAGGAUCUUCUGUGGAAGUUGGGCCAGUUUCCUAAACUAACUCCCAGACU
...(..(((((((((....(((((((.((......)))))))))....(((....))))))))))))..).((((.(((.(((((...((....))...)))))))))))).. ( -41.60)
>rn3.chrX/128453541-128453654
AGUGGCUUUGGGGGCUUUUGAGCUCUGAGGGAAAACUGGAGCUCCUGAGGCAAGUGCUGCCCUCAGGAUCUUCUGUGGAGUUUGGGCCAGUUUCCUAAACUAACUCCCAGACU
(((..((((.((((((....)))))).))))...)))((((.((((((((((.....)).)))))))).)))).....((((((((..((((.........)))))))))))) ( -43.80)
>canFam1.chrX/84324921-84325040
AGUGCCUCAGGGGCUCCUGGGCUCUGAGAGAAGGCUGGAGCUCCAGGGGUUAAGUGCUGCCCUCCGGAUCUUCUGCUGAGGCUGAGGCCAGGCCAGCUUCCUAAACUAACUCCCAGACU
...(((.((((....)))))))((((.(((..(((.((((.(((.(((((........)))))..))).)))).)))((((((..(((...))))))))).........))).)))).. ( -46.50)
>consensus
AGUGGCUUCAGGGGCUCCUGAGCUCUGAGGGAAGACUGGAGCUCCUGAGG_CAAGUGCUGCCCUCAGGAUCUUCUGCGGAGGCUG______GGCCAGCUUCCUAAACUAACUCCCAGACU
(((...((((((.(((....)))))))))(((((.((((...((((((((.((.....)).)))))))).((((....))))...........)))))))))...)))............ (-31.59 = -30.53 +  -1.06) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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