Structure #201014

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	106,809,575 - 106,809,694
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.07
Columns	120
Mean single MFE	-26.74
Consensus MFE	-21.79
Combinations/base pair	32 / 29 = 1.10
SCI	0.81
z-score	-2.38
RNA class probability	0.977194

This structure is part of cluster 111626

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.07
 Mean single sequence MFE: -26.74
 Consensus MFE: -21.79
 Energy contribution: -23.85
 Covariance contribution:   2.06
 Mean z-score:  -2.38
 Structure conservation index:   0.81
 SVM decision value:   1.79
 SVM RNA-class probability: 0.977194
 Prediction: RNA

######################################################################

>hg17.chrX/106809575-106809694
AUGCAGCCCCAGCCUGAGCAGAAGCAAGAUUCCAGGGCUGGAGCUUCAUAACACCCAAAUCAUUGGUCAAUUCUAUUAAACAAAAUCAAAUUUAAAAAAAUCACCAUUUUUGGCAUCAG
(((.(((.(((((((.....(((......)))..))))))).))).))).....(((((....((((........(((((..........))))).......))))..)))))...... ( -24.76)
>mm5.chrX/130591274-130591390
AGGCAGCCUCAGCCUGAAUAGAAGUAGGAUUCUAGGGCUGGGGCUCCCUAAUACCCAAACCACUGGUCAAUUCCAUUAAAUAAAAUCAAAUUUUAAAAACACGUUUUUGGCAUUUG
(((.(((((((((((...(((((......)))))))))))))))).)))..............(((......)))...........(((((.(((((((....))))))).))))) ( -34.20)
>rn3.chrX/128453814-128453930
AUACAGCCUCAGCCUCAACAGAAGUAGGAUUCUAAGGCUGGGGCUCCCUAACACCCAAACCACUGGUCAAAUCCAUUAAAUAAAAUCAAAUCUUAAAAACACGUUUUUGGCAUUUG
....(((((((((((....((((......)))).)))))))))))..................(((......)))...........(((((.(((((((....))))))).))))) ( -27.80)
>canFam1.chrX/84325200-84325316
ACACAGCCCCCGCCUGAGCAGAAGCAGGAUUCUAGGGCCGAGGCUCCAUAACACCCAAACCACUGGUCAAUUCUAUUAAAUAAAACCAAAUUAAAAAACACUGUUUUUGGCAUCAC
.....(((...((....))((((((((.......((((....)).)).......(((......)))..................................)))))))))))..... ( -20.20)
>consensus
AUACAGCCCCAGCCUGAACAGAAGCAGGAUUCUAGGGCUGGGGCUCCAUAACACCCAAACCACUGGUCAAUUCCAUUAAAUAAAAUCAAA_UUUAAAAACA____CGUUUUUGGCAUCAG
(((.(((((((((((....((((......)))).))))))))))).))).....(((......)))..........................((((((((......))))))))...... (-21.79 = -23.85 +   2.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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