Structure #201017

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	106,809,575 - 106,809,694
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.07
Columns	120
Mean single MFE	-32.53
Consensus MFE	-30.74
Combinations/base pair	52 / 39 = 1.33
SCI	0.94
z-score	-1.53
RNA class probability	0.855894

This structure is part of cluster 111626

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.07
 Mean single sequence MFE: -32.53
 Consensus MFE: -30.74
 Energy contribution: -29.80
 Covariance contribution:  -0.94
 Mean z-score:  -1.53
 Structure conservation index:   0.94
 SVM decision value:   0.81
 SVM RNA-class probability: 0.855894
 Prediction: RNA

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>hg17.chrX/106809694-106809575
CUGAUGCCAAAAAUGGUGAUUUUUUUAAAUUUGAUUUUGUUUAAUAGAAUUGACCAAUGAUUUGGGUGUUAUGAAGCUCCAGCCCUGGAAUCUUGCUUCUGCUCAGGCUGGGGCUGCAU
.(((((((.....((((((((((.((((((........)))))).)))))).))))........)))))))((.((((((((((.(((......((....))))))))))))))).)). ( -36.12)
>mm5.chrX/130591390-130591274
CAAAUGCCAAAAACGUGUUUUUAAAAUUUGAUUUUAUUUAAUGGAAUUGACCAGUGGUUUGGGUAUUAGGGAGCCCCAGCCCUAGAAUCCUACUUCUAUUCAGGCUGAGGCUGCCU
..((((((................(((((.(((......))).)))))((((...))))..))))))(((.((((.(((((.(((((......)))))....))))).)))).))) ( -32.90)
>rn3.chrX/128453930-128453814
CAAAUGCCAAAAACGUGUUUUUAAGAUUUGAUUUUAUUUAAUGGAUUUGACCAGUGGUUUGGGUGUUAGGGAGCCCCAGCCUUAGAAUCCUACUUCUGUUGAGGCUGAGGCUGUAU
..(((((((((..(((.....((((((...))))))....)))..)))).((((....)))))))))..(.((((.(((((((((((......))))...))))))).)))).).. ( -28.90)
>canFam1.chrX/84325316-84325200
GUGAUGCCAAAAACAGUGUUUUUUAAUUUGGUUUUAUUUAAUAGAAUUGACCAGUGGUUUGGGUGUUAUGGAGCCUCGGCCCUAGAAUCCUGCUUCUGCUCAGGCGGGGGCUGUGU
((((((((.....((.((....(((((((.(((......))).))))))).)).)).....))))))))(.((((((.(((.(((((......)))))....))).)))))).).. ( -32.20)
>consensus
CAAAUGCCAAAAACG____UGUUUUUAAA_UUUGAUUUUAUUUAAUAGAAUUGACCAGUGGUUUGGGUGUUAGGGAGCCCCAGCCCUAGAAUCCUACUUCUGCUCAGGCUGAGGCUGCAU
..(((((((((((((....))))))).....(..(((((((...)))))))..)...........))))))(((.((((((((((.(((((......)))))....)))))))))).))) (-30.74 = -29.80 +  -0.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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