Structure #201647
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | - |
| Position | 114,183,860 - 114,183,986 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 92.33 |
| Columns | 126 |
| Mean single MFE | -37.82 |
| Consensus MFE | -35.03 |
| Combinations/base pair | 41 / 36 = 1.14 |
| SCI | 0.93 |
| z-score | -2.2 |
| RNA class probability | 0.978319 |
This structure is part of cluster 111995
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 126 Columns: 126 Strand: + Mean pairwise identity: 92.33 Mean single sequence MFE: -37.83 Consensus MFE: -35.03 Energy contribution: -35.65 Covariance contribution: 0.62 Mean z-score: -2.20 Structure conservation index: 0.93 SVM decision value: 1.81 SVM RNA-class probability: 0.978319 Prediction: RNA ###################################################################### >hg17.chrX/114183986-114183860 AGCAUUGUGCAAUGGCCUUUGGUUUUUCUUGUAACCAGUUAGGUCUGAAACCAAUGCAAAAGAAAUUUCCUUUUUCCACGAGAAACAUCCCUGCAGUGGGUUGUUCCUAUCGACAGGAGGUUACAC .((((((......(((((((((((........))))))..)))))......))))))....(.((((((((...((....((.((((.(((......))).)))).))...)).)))))))).).. ( -35.80) >mm5.chrX/137375543-137375417 AGCAUUGUGCAAUGGCCUUUGGUUUUCCUUGUAACCAAUUAGGUCUGAAAACAAUGCAAGAGAAAUGUCCUUUUUCCACGAGAAACAAUCCUGCAGUGGGUUGUUCCUAUCGACAGGAGGUUACAC .(((((((.....(((((((((((........))))))..))))).....)))))))....(.(((.((((...((....((.((((((((......)))))))).))...)).)))).))).).. ( -39.70) >rn3.chrX/130271623-130271749 AGCAUUGGGCAAUGGCCUUUGGUUUUCCUUGUAACCAAUUAGGUCUGAAAACAAUGCAAGAGAAAUGUCCUUUUUCCACGAGAAACUAUCCUGCAGUGGGUUGUUCCUAUCGACAGGAGGUUACAC .((((((......(((((((((((........))))))..)))))......))))))..((((((.....)))))).....(.((((.((((((.(((((.....))))).).))))))))).).. ( -37.50) >canFam1.chrX/90952442-90952316 AGCAUUGUGCAAUGGCCUUUGGUUUUUCUCAUAGCCAAUUAGGUCUGAAAGCAAUGCAAGAGAAACUUCCUUUUUCCACGAGAAACUUCCCUGUGGUGGGUUGUUCCUAUCGACAGAAGGGUACAC .(((((((.....(((((((((((........))))))..))))).....)))))))..((((((.....))))))........((((..((((((((((.....)))))).))))..)))).... ( -38.30) >consensus AGCAUUGUGCAAUGGCCUUUGGUUUUCCUUGUAACCAAUUAGGUCUGAAAACAAUGCAAGAGAAAUGUCCUUUUUCCACGAGAAACAACCCUGCAGUGGGUUGUUCCUAUCGACAGGAGGUUACAC .(((((((.....(((((((((((........))))))..))))).....)))))))...........((((((((....((.((((((((......)))))))).))...)).))))))...... (-35.03 = -35.65 + 0.62)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
