Structure #202754

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	128,565,951 - 128,566,071
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	75
Columns	120
Mean single MFE	-35.24
Consensus MFE	-27.28
Combinations/base pair	28 / 20 = 1.40
SCI	0.77
z-score	-2.12
RNA class probability	0.993608
Warning	Base composition out of range

This structure is part of cluster 112633

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  75.00
 Mean single sequence MFE: -35.24
 Consensus MFE: -27.28
 Energy contribution: -25.46
 Covariance contribution:  -1.81
 Mean z-score:  -2.12
 Structure conservation index:   0.77
 SVM decision value:   2.41
 SVM RNA-class probability: 0.993608
 Prediction: RNA

######################################################################

>hg17.chrX/128565951-128566071
CCUCCCUACCACUACUACACAGAGCUACCCUCUUCCUGCCUUUCCCUGUCUGUCCCAGUUGCUCUAGGGUCCUCCUAGUCUGUGCCCUGGGCCUGGCCACAUGGUUGGCUGCCUGGGGAG
.(((((((............((((.....))))....(((...((.(((.....((((..((.((((((..(.........)..))))))))))))..))).))..)))....))))))) ( -37.60)
>mm5.chrX/40430663-40430783
CUAAACUAUCUCUGCUACACGAUAUUAUCCUUUUUCUGUCUUUCCCUGACUGUCUUAGUUGCUCUAGGGGCCUCCUACUCUGUUCCUUGGGCCUGGCCACAUGCUUGGCCGCCUAAGGAA
.............(((.....................(((.......)))...(((((.....))))))))...........((((((((((..(((((......))))))))))))))) ( -30.80)
>rn3.chrX/134516683-134516803
CUGUCCUAUCCCUACAGCAUGAUAUUGUCCUUUUUCCAUCUUUCCCUGACUGUCGUAGUUGCUCUAGGGGCCUCCCACUCUGUUCCUUAGGCCUGGCCACAUGCUUGGCUGCCUGAGGAA
........((((((.(((((((((..(((..................))))))))....)))).))))))............((((((((((..(((((......))))))))))))))) ( -36.17)
>canFam1.chrX/103983330-103983450
CAUCCCUACCGCCACUCUCCAGCCUUGGCCCCUUCCUGCUUCUCUCUGUCUAUCCCAGUUUCUCUGGAGUCUUCCUACUCUGCUCCCUGGGCCUGGCCACAUGGUUGGCUGCCUGGGGAG
..(((((((.((((....((((((..(((((......((................(((.....)))((((......)))).)).....))))).)))....))).)))).)..)))))). ( -36.40)
>consensus
CUUCCCUACCACUACUACACAAUAUUAUCCUCUUCCUGCCUUUCCCUGACUGUCCCAGUUGCUCUAGGGGCCUCCUACUCUGUUCCCUGGGCCUGGCCACAUGCUUGGCUGCCUGAGGAA
...........................................(((((................))))).............((((((((((..(((((......))))))))))))))) (-27.28 = -25.46 +  -1.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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