Structure #202760

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	128,565,991 - 128,566,111
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.06
Columns	120
Mean single MFE	-43.38
Consensus MFE	-32.81
Combinations/base pair	39 / 32 = 1.22
SCI	0.76
z-score	-1.59
RNA class probability	0.634723

This structure is part of cluster 112633

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.06
 Mean single sequence MFE: -43.38
 Consensus MFE: -32.81
 Energy contribution: -33.38
 Covariance contribution:   0.56
 Mean z-score:  -1.59
 Structure conservation index:   0.76
 SVM decision value:   0.20
 SVM RNA-class probability: 0.634723
 Prediction: RNA

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>hg17.chrX/128566111-128565991
UCUUCACCCCAACCUCUGGUACUGGGAACAAAGCCAGGGCCUCCCCAGGCAGCCAACCAUGUGGCCAGGCCCAGGGCACAGACUAGGAGGACCCUAGAGCAACUGGGACAGACAGGGAAA
.......(((..(((((((..((((........))))..)).(((..(((.((((......))))...)))..))).........)))))..(((((.....))))).......)))... ( -42.60)
>mm5.chrX/40430822-40430703
AUUGUAUCCCACCUCUGGCUUUGGGAACCAUGCCAGAUCUUCCUUAGGCGGCCAAGCAUGUGGCCAGGCCCAAGGAACAGAGUAGGAGGCCCCUAGAGCAACUAAGACAGUCAGGGAAA
......((((((.(((.((((((((..((...((...((((((((.((((((((......)))))..))).)))))..)))...)).))..)))))))).....)))..))..)))).. ( -43.00)
>rn3.chrX/134516842-134516723
AUUGUAUCCCACCUCUGGCUUUGGGAACCAUGCCAGGUCUUCCUCAGGCAGCCAAGCAUGUGGCCAGGCCUAAGGAACAGAGUGGGAGGCCCCUAGAGCAACUACGACAGUCAGGGAAA
...((.(((((((((((((..(((...))).)))))...(((((.((((.((((......))))...)))).))))).)).)))))).))((((.((.............))))))... ( -44.02)
>canFam1.chrX/103983490-103983370
UCUUCACCCCCACCUCUGGUGCUGGGAACCGUGCCAGGGCCUCCCCAGGCAGCCAACCAUGUGGCCAGGCCCAGGGAGCAGAGUAGGAAGACUCCAGAGAAACUGGGAUAGACAGAGAGA
(((((........((((((..(.(....).)..)))))).(((((..(((.((((......))))...)))..)))))........))))).(((((.....)))))............. ( -43.90)
>consensus
ACUGCACCCC_ACCUCUGGCUCUGGGAACCAUGCCAGGGCCUCCCCAGGCAGCCAACCAUGUGGCCAGGCCCAAGGAACAGAGUAGGAGGACCCUAGAGCAACUAGGACAGACAGGGAAA
.......(((..(((((((((((((........))))))))((((..(((.((((......))))...)))..))))........)))))..(((((.....))))).......)))... (-32.81 = -33.38 +   0.56) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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