Structure #202770

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	128,566,031 - 128,566,151
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.87
Columns	120
Mean single MFE	-47.84
Consensus MFE	-39.81
Combinations/base pair	38 / 30 = 1.27
SCI	0.83
z-score	-2.38
RNA class probability	0.980258

This structure is part of cluster 112633

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.87
 Mean single sequence MFE: -47.84
 Consensus MFE: -39.81
 Energy contribution: -38.88
 Covariance contribution:  -0.94
 Mean z-score:  -2.38
 Structure conservation index:   0.83
 SVM decision value:   1.86
 SVM RNA-class probability: 0.980258
 Prediction: RNA

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>hg17.chrX/128566151-128566031
UGGGCCCUGAGGGCUGGCCACACUCCAGUCAGCCCGCAUGUCUUCACCCCAACCUCUGGUACUGGGAACAAAGCCAGGGCCUCCCCAGGCAGCCAACCAUGUGGCCAGGCCCAGGGCACA
...((((((.((.(((((((((.((((((..(((.......................)))))))))......(((.(((....))).))).........))))))))).))))))))... ( -53.30)
>mm5.chrX/40430861-40430743
UGGCCCUGAGGGCUGGCCAUACUCCAACCAGCCCACGAAAUUGUAUCCCACCUCUGGCUUUGGGAACCAUGCCAGAUCUUCCUUAGGCGGCCAAGCAUGUGGCCAGGCCCAAGGAACA
(((......(((((((...........)))))))(((....)))...)))..((((((..(((...))).))))))..((((((.((((((((......)))))..))).)))))).. ( -44.90)
>rn3.chrX/134516881-134516763
UGGCCCUGAGGGCUGGCCACACUCCAACCAGCCCACGAAAUUGUAUCCCACCUCUGGCUUUGGGAACCAUGCCAGGUCUUCCUCAGGCAGCCAAGCAUGUGGCCAGGCCUAAGGAACA
.(..(((.(((.(((((((((.(((((..((((...((...((.....))..)).))))))))).....(((((((....)))..))))........))))))))).))).)))..). ( -44.10)
>canFam1.chrX/103983530-103983410
UGGGCCCUGUGGACUGGCCAUGCUCCAACCAGCCCACACAUCUUCACCCCCACCUCUGGUGCUGGGAACCGUGCCAGGGCCUCCCCAGGCAGCCAACCAUGUGGCCAGGCCCAGGGAGCA
.(..(((((.((.((((((((.......((((((((....................))).)))))......((((.(((....))).)))).........)))))))).)))))))..). ( -49.05)
>consensus
UGG_CCCUGAGGGCUGGCCACACUCCAACCAGCCCACAAAACUGCACCCC_ACCUCUGGCUCUGGGAACCAUGCCAGGGCCUCCCCAGGCAGCCAACCAUGUGGCCAGGCCCAAGGAACA
....(((((.((.(((((((((.(((((((((.......................))))..)))))......(((.((......)).))).........))))))))).))))))).... (-39.81 = -38.88 +  -0.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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