Structure #202777

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	128,566,111 - 128,566,230
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.64
Columns	120
Mean single MFE	-48.62
Consensus MFE	-33.44
Combinations/base pair	39 / 34 = 1.15
SCI	0.69
z-score	-2.43
RNA class probability	0.93064

This structure is part of cluster 112633

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.64
 Mean single sequence MFE: -48.62
 Consensus MFE: -33.44
 Energy contribution: -35.00
 Covariance contribution:   1.56
 Mean z-score:  -2.43
 Structure conservation index:   0.69
 SVM decision value:   1.21
 SVM RNA-class probability: 0.930640
 Prediction: RNA

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>hg17.chrX/128566111-128566230
CAUGCGGGCUGACUGGAGUGUGGCCAGCCCUCAGGGCCCAGCUGCAGGGCGCAGGGCCAAGUUGACAAUGCCAGCCACUGGAGACAGAGUGGCAACUACUGCUGUCGCCUCCAAAAUAC
..((.((((.(((.(.(((((((((.((((((((.......))).)))))....))))).........(((((.(..(((....))).))))))..)))).).))))))).))...... ( -48.80)
>mm5.chrX/40430822-40430940
UUCGUGGGCUGGUUGGAGUAUGGCCAGCCCUCAGGGCCAGCUGCAGGGCACAAGGCCAAGUUGACAAUGCCAACCACUGGAGACAGAGUGGCAACUUCUUCUCUAGCUUCCAAAAUAC
...(..((((((..(((((.(((((.((((((((......))).)))))....))))).........(((((....(((....)))..))))))))))....))))))..)....... ( -48.20)
>rn3.chrX/134516842-134516960
UUCGUGGGCUGGUUGGAGUGUGGCCAGCCCUCAGGGCCAGCUGCAGGGCACAAGGCCAAGUUGACAAUGCCAACCACUGGAGACAGAGUGGCAGCUUCUUCUCUAGCUUCCAAAAUAC
...(..((((((..(((((.(((((.((((((((......))).)))))....))))).........(((((....(((....)))..))))))))))....))))))..)....... ( -48.40)
>canFam1.chrX/103983490-103983610
UGUGUGGGCUGGUUGGAGCAUGGCCAGUCCACAGGGCCCAGCUGCAGGACACGGAGCCAAGUUCACAAUGCUAGCCUGGCAGAGACAGAGUGGCAACUGCUGCUGUUGCCUACAAAAUAA
..(((((((((((((.....)))))))))))))((((.((((.((((......((((...))))....(((((..(((.......)))..))))).)))).))))..))))......... ( -49.10)
>consensus
UUCGUGGGCUGGUUGGAGUAUGGCCAGCCCUCAGGG_CCAGCUGCAGGGCACAAGGCCAAGUUGACAAUGCCAACC_ACUGGAGACAGAGUGGCAACUUCUGCUCUAGCCUCCAAAAUAC
...(.((((((...(((((((((((.((((((((.......))).)))))....))))).........(((((.....(((....)))..)))))..))))))..)))))).)....... (-33.44 = -35.00 +   1.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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