Structure #202783

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	128,566,151 - 128,566,270
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.8
Columns	120
Mean single MFE	-38.88
Consensus MFE	-25.41
Combinations/base pair	40 / 36 = 1.11
SCI	0.65
z-score	-1.96
RNA class probability	0.72529

This structure is part of cluster 112633

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.80
 Mean single sequence MFE: -38.88
 Consensus MFE: -25.41
 Energy contribution: -29.35
 Covariance contribution:   3.94
 Mean z-score:  -1.96
 Structure conservation index:   0.65
 SVM decision value:   0.41
 SVM RNA-class probability: 0.725290
 Prediction: RNA

######################################################################

>hg17.chrX/128566151-128566270
GCUGCAGGGCGCAGGGCCAAGUUGACAAUGCCAGCCACUGGAGACAGAGUGGCAACUACUGCUGUCGCCUCCAAAAUACCAGUUGAGGUUUUCUCCUACUGUGGGGUUUAGAAACUAUU
.(..(((((((((((((...(....)...))).(((((((....)..)))))).....)))).)))(((((.............))))).........)))..)((((....))))... ( -35.32)
>mm5.chrX/40430861-40430980
GCUGCAGGGCACAAGGCCAAGUUGACAAUGCCAACCACUGGAGACAGAGUGGCAACUUCUUCUCUAGCUUCCAAAAUACCAGUGGAGGUUUUCUUCUACUUCGGUAUUUGGAAACUAUU
((((.(((((.....)))..........(((((....(((....)))..))))).......)).))))(((((((.((((((((((((....))))))))..)))))))))))...... ( -42.10)
>rn3.chrX/134516881-134517000
GCUGCAGGGCACAAGGCCAAGUUGACAAUGCCAACCACUGGAGACAGAGUGGCAGCUUCUUCUCUAGCUUCCAAAAUACCAGUGGAGGUUUUCCUCUACUUUGGUAUUUGGAAACUAUU
((((.(((((.....))).....((...(((((....(((....)))..)))))...))..)).))))(((((((.((((((((((((....)))))))..))))))))))))...... ( -45.50)
>canFam1.chrX/103983530-103983650
GCUGCAGGACACGGAGCCAAGUUCACAAUGCUAGCCUGGCAGAGACAGAGUGGCAACUGCUGCUGUUGCCUACAAAAUAACAGUUGAGGUUUUCUGCUGCUUUAGGGUUUCGAAACUAUU
...........(((((((.(((.......)))(((..((((((((...((..((....))..))...((((.(((........))))))))))))))))))....)))))))........ ( -32.60)
>consensus
GCUGCAGGGCACAAGGCCAAGUUGACAAUGCCAACC_ACUGGAGACAGAGUGGCAACUUCUGCUCUAGCCUCCAAAAUACCAGUGGAGGUUUUCUUCUACUUUGGGAUUUGGAAACUAUU
((((((((((.....)))..........(((((.....(((....)))..))))).......))))))).((((((.((((((((((((....))))))))..))))))))))....... (-25.41 = -29.35 +   3.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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