Functions to generate annotations for Secondary Structure Plots, Dot-Plots, and Others

Overview

// global functions

char** vrna_annotate_covar_struct (
    const char** alignment,
    const char* structure,
    vrna_md_t* md
    )

vrna_cpair_t* vrna_annotate_covar_pairs (
    const char** alignment,
    vrna_ep_t* pl,
    vrna_ep_t* mfel,
    double threshold,
    vrna_md_t* md
    )

Detailed Documentation

Global Functions

char** vrna_annotate_covar_struct (
    const char** alignment,
    const char* structure,
    vrna_md_t* md
    )
Produce covariance annotation for an alignment given a secondary structure.
vrna_cpair_t* vrna_annotate_covar_pairs (
    const char** alignment,
    vrna_ep_t* pl,
    vrna_ep_t* mfel,
    double threshold,
    vrna_md_t* md
    )
Produce covariance annotation for an alignment given a set of base pairs.