Rainer Machné's model repository

Most of the models below are also featured at TBI's systems biology wiki.
The quickest way to locate them there, might be via their images.
Click on the image of the model and then follow the `Links' at the bottom.

No warranties given on correctness and/or equivalence to the published versions of these models!
Please contact me if you want to use these models for your work!

SBML

several MAP kinase related models

SBML / CellDesigner

The following SBML models were all constructed and can be opened in CellDesigner.

Metabolism

Hynne et al. 2001: oscillatory glycolysis in yeast cells
Cortassa et al. 2003: calcium-activated TCA cycle and respiration in muscle cells of the heart
Wolf et al. 2001: the highly conserved eukaryotic sulfur assimilation pathway, here in relation to yeast respiratory oscillations
Rovers and Giersch 1995: a simple model of photosynthetic oscillations
Poolman et al. 2004: a detailed model of the Calvin Cycle in C3-plants

Signaling

Keizer and Levine 1996: RyR, ryanidine-sensitive calcium channel of the endoplasmatic reticulum
Sneyd and Dufour 2002: IP3R, IP3-sensitive calcium channel of the endoplasmatic reticulum

Gene Regulation

Swat et al. 2004: G1/S transition in the mammalian cell cycle

No warranties given on correctness and/or equivalence to the published versions of these models!
Please contact me if you want to use these models for your work!

Other (SBML) model repositories

biomodels
JWS

_____________________________
Last modified: 2006-09-04 18:22:23 raim