#include <ViennaRNA/2Dpfold.h>
Variables compound for 2Dfold partition function folding. More…
// fields unsigned int alloc char* ptype char* sequence short* S short* S1 unsigned int maxD1 unsigned int maxD2 double temperature double init_temp FLT_OR_DBL* scale FLT_OR_DBL pf_scale vrna_exp_param_t* pf_params int* my_iindx int* jindx short* reference_pt1 short* reference_pt2 unsigned int* referenceBPs1 unsigned int* referenceBPs2 unsigned int* bpdist unsigned int* mm1 unsigned int* mm2 int circ int dangles unsigned int seq_length FLT_OR_DBL*** Q FLT_OR_DBL*** Q_B FLT_OR_DBL*** Q_M FLT_OR_DBL*** Q_M1 FLT_OR_DBL*** Q_M2 FLT_OR_DBL** Q_c FLT_OR_DBL** Q_cH FLT_OR_DBL** Q_cI FLT_OR_DBL** Q_cM int** l_min_values int** l_max_values int* k_min_values int* k_max_values int** l_min_values_b int** l_max_values_b int* k_min_values_b int* k_max_values_b int** l_min_values_m int** l_max_values_m int* k_min_values_m int* k_max_values_m int** l_min_values_m1 int** l_max_values_m1 int* k_min_values_m1 int* k_max_values_m1 int** l_min_values_m2 int** l_max_values_m2 int* k_min_values_m2 int* k_max_values_m2 int* l_min_values_qc int* l_max_values_qc int k_min_values_qc int k_max_values_qc int* l_min_values_qcH int* l_max_values_qcH int k_min_values_qcH int k_max_values_qcH int* l_min_values_qcI int* l_max_values_qcI int k_min_values_qcI int k_max_values_qcI int* l_min_values_qcM int* l_max_values_qcM int k_min_values_qcM int k_max_values_qcM FLT_OR_DBL* Q_rem FLT_OR_DBL* Q_B_rem FLT_OR_DBL* Q_M_rem FLT_OR_DBL* Q_M1_rem FLT_OR_DBL* Q_M2_rem FLT_OR_DBL Q_c_rem FLT_OR_DBL Q_cH_rem FLT_OR_DBL Q_cI_rem FLT_OR_DBL Q_cM_rem vrna_fold_compound_t* compatibility
char* ptype
char* sequence
short* S1
unsigned int maxD1
unsigned int maxD2
int* my_iindx
int* jindx
unsigned int* referenceBPs1
unsigned int* referenceBPs2
unsigned int* bpdist
unsigned int* mm1
unsigned int* mm2