struct vrna_pinfo_s
#include <ViennaRNA/aln_util.h>
Overview
A base pair info structure. More…
// fields
unsigned i
unsigned j
float p
float ent
short bp[8]
char comp
Detailed Documentation
A base pair info structure.
For each base pair (i,j) with i,j in [0, n-1] the structure lists:
- its probability ‘p’
- an entropy-like measure for its well-definedness ‘ent’
- the frequency of each type of pair in ‘bp[]’
- ‘bp[0]’ contains the number of non-compatible sequences
- ‘bp[1]’ the number of CG pairs, etc.
Fields
unsigned i
nucleotide position i
unsigned j
nucleotide position j
float ent
Pseudo entropy for :math:` p(i,j) = S_i + S_j - p_ij*ln(p_ij) ` .
short bp [8]
Frequencies of pair_types.
char comp
1 iff pair is in mfe structure