struct interact

#include <ViennaRNA/data_structures.h>

Overview

interaction data structure for RNAup More…

// fields

double* Pi
double* Gi
double Gikjl
double Gikjl_wo
int i
int k
int j
int l
int length

Detailed Documentation

interaction data structure for RNAup

Fields

double* Pi
probabilities of interaction
double* Gi
free energies of interaction
double Gikjl
full free energy for interaction between [k,i] k<i in longer seq and [j,l] j<l in shorter seq
double Gikjl_wo
Gikjl without contributions for prob_unpaired.
int i
k<i in longer seq
int k
k<i in longer seq
int j
j<l in shorter seq
int l
j<l in shorter seq
int length
length of longer sequence