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Up: Gene and Promoter Prediction
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Next we verify the predicted genes by searching for transcriptional
start sites (TSS). The -10 and -35 boxes can then be deduced from the
up-steam regions of the TSS.
- Do a promoter prediction for the whole Helicobacillus mobilis
sequence using BPROM
http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb.
NOTE: TSS are labelled LDF in the output.
- Use PPP
(HMM based)
or Neural Network Promoter Prediction
for another analysis.
- Compare the results of both predictions and discuss differences
and similar findings.
Christoph Flamm
2009-01-06