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TBI WORKING PAPERS 2011

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TBI Working Papers are usually works in progress or papers submitted for publication in refereed scientific journals. They contain accounts of the scientific work of the author(s) and do not necessarily represent the views of the TBI.

© NOTICE: All papers are copyrighted by the authors; revised versions that appear in print are copyrighted by the publication in which each appears.
If you would like to use all or a portion of any paper, please contact the author.
AREsite: a database for the comprehensive investigation of AU-rich elements

Author: Gruber AR, Fallmann J, Kratochvill F, Kovarik P, Hofacker IL
ID: TBI-p-2011-1
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Link to publication: [Nucleic Acids Res. 39(Database issue):D66-9 (2011). ]

A folding algorithm for extended RNA secondary structures

Author: Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, and Ivo L. Hofacker
ID: TBI-p-2011-2
Status: published
Abstract:         [Abstract]
PDF: No pdf submitted
Supplements: [Link to Supplements]
Link to publication: [Bioinformatics (2011) 27 (13): i129-i136. ]

RNApredator: fast accessibility-based prediction of sRNA targets

Author: Eggenhofer F, Tafer H, Stadler F P, Hofacker L I
ID: TBI-p-2011-3
Status: published
Abstract:         [Abstract]
PDF: No pdf submitted
Supplements: [Link to Supplements]
Link to publication: [Nucleic Acid Research - Webserver Issue 2011]

ViennaRNA Package 2.0

Author: Ronny Lorenz, Stephan H Bernhart, Christian Hoener zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F Stadler, Ivo L Hofacker
ID: TBI-p-2011-4
Status: submitted
Abstract:         [Abstract]
PDF: [Link to PDF]

Animal snoRNAs and scaRNAs with Exceptional Structures

Author: Marz, Manja, Andreas Gruber, Christian Höner zu Siederdissen, Fabian Ammann, Stefan Badelt, Sebastian Bartschat, Stephan H. Bernhart, Wolfgang Beyer, Stefanie Kehr, Ronny Lorenz, Andrea Tanzer, Dilmur
ID: TBI-p-2011-5
Status: in press
Abstract:         [Abstract]
PDF: No pdf submitted

Maximizing Output and Recognizing Autocatalysis in Chemical Reaction Networks is NP-Complete

Author: Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler
ID: TBI-p-2011-6
Status: submitted
Abstract:         [Abstract]
PDF: [Link to PDF]