Detecting Conserved RNA Structures

The program alidot is designed to detect conserved RNA secondary structures in small data sets of related RNA sequences. The method, which is described in detail in [1,2], is a combination of structure prediction and comparative sequence alignment.

More information is contained in the file README. The program alidot and the associated perl scripts are part of the Vienna RNA Package which is distributed subject to this COPYRIGHT notice.

Current version:
alidot 2.0 [Download] [Online Manual] New
Old version(s):
alidot/pfrali 1.0 [Download] [On-Line Manual]
If find this software useful for your research, please cite the following papers:
Institut für theoretische Chemie, Währingerstr. 17,
A-1090 Wien, Austria
Last modified: Wed Apr 10 16:30:40 CEST 2002