BARMAP_SIMULATOR

NAME

barmap_simulator − perform dynamic landscape simulation

SYNOPSIS

barmap_simulator.pl [[−t0 FLOAT ] [−t8 FLOAT ] [−inc FLOAT ]] −p0 STRING barmap-file

DESCRIPTION

The program writes a shell-script which drives the program "treekin" to simulate RNA folding on a dynamic landscape.

OPTIONS

−t0 FLOAT

Set start time of kinetic simulation to FLOAT (default: 0.1).

−t8 FLOAT

Set stop time of kinetic simulation to FLOAT (default: 10.0).

−inc FLOAT

Set time increment of kinetic simulation to FLOAT (default: 1.02).

−p0 STRING

Specify initial population for minima on the first energy landscape. For example if we want to start with 35% of the population in minimum 3 and 65% in minimum 5 the STRING looks as follows "3=.35:5=.65" (floats must sum to 1).

AUTHORS

Christoph Flamm

BUGS

Please send comments and bug reports to xtof@tbi.univie.ac.at.