barmap_simulator − perform dynamic landscape simulation
barmap_simulator.pl [[−t0 FLOAT ] [−t8 FLOAT ] [−inc FLOAT ]] −p0 STRING barmap-file
The program writes a shell-script which drives the program "treekin" to simulate RNA folding on a dynamic landscape.
Set start time of kinetic simulation to FLOAT (default: 0.1).
Set stop time of kinetic simulation to FLOAT (default: 10.0).
Set time increment of kinetic simulation to FLOAT (default: 1.02).
Specify initial population for minima on the first energy landscape. For example if we want to start with 35% of the population in minimum 3 and 65% in minimum 5 the STRING looks as follows "3=.35:5=.65" (floats must sum to 1).
Please send comments and bug reports to email@example.com.