Kinfold

The program Kinfold (Flamm et al., 2000) simulates the stochastic folding kinetics of RNA sequences into secondary structures. The algorithm operates on the basis of the formation, dissociation, and the shifting of individual base pairs. For the energy evaluation of RNA secondary structures Kinfold uses routines from the Vienna RNA Package and is also distributed with the package.

References

2000

  1. journal-article
    RNA folding at elementary step resolution
    Christoph Flamm, Walter Fontana, Ivo L. Hofacker, and 1 more author
    RNA, 2000
    DOI