Software

TBI develops and maintains software for computational RNA biology, molecular evolution, and algorithmic chemistry. Active and discontinued tools are listed separately below.

Active Software
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Vienna RNA Package

The glorious ViennaRNA Package
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AREsite
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Alidot
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BarMap
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Barriers
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Basin Hopping Graph Framework
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Bcheck

rnpB gene prediction
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CMcompare
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Codaln

Alignments of Nucleic Acid Sequences
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Cycdeco

Relevant Cycles of undirected graphs
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Graph Grammar Library
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Kinfold
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RNAwolf
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SOSlib

The SMBL ODE Solver Library
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Treekin

Folding dynamics via numerical integration
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Vienna Reaction Network Library
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Vienna Atlas of Viral RNA Structures

Discontinued Software
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RNApredator

Prediction of bacterial sRNA targets
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RNAstrand

Plus/Minus strand prediction of structured RNAs
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RNAxs

siRNA design
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RNAz

Non-coding RNA prediction
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Structure Conservation Analysis
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ProbA

Stochastic pairwise sequence alignment