odeSolver.c File Reference

#include <stdio.h>
#include <stdlib.h>
#include <unistd.h>
#include <string.h>
#include <time.h>
#include <sbml/SBMLTypes.h>
#include "sbmlsolver/odeSolver.h"

Include dependency graph for odeSolver.c:

Functions
SBML_ODESOLVER_API SBMLResults_t *	SBML_odeSolver (SBMLDocument_t *d, cvodeSettings_t *set)
	Solves the timeCourses for a SBML model, passed via a libSBML SBMLDocument structure and according to passed integration settings and returns the SBMLResults structure.
SBML_ODESOLVER_API SBMLResultsMatrix_t *	SBML_odeSolverBatch (SBMLDocument_t *d, cvodeSettings_t *set, varySettings_t *vs)
	Solves the timeCourses for a SBML model, passed via a libSBML SBMLDocument structure and according to passed integration and parameter variation settings and returns the SBMLResultsMatrix containing SBMLResults for each varied parameter (columns) and each of its values (rows).
SBML_ODESOLVER_API SBMLResults_t *	Model_odeSolver (Model_t *m, cvodeSettings_t *set)
	Solves the timeCourses for a SBML model, passed via a libSBML Model_t (must be level 2 SBML!!) and according to passed integration settings and returns the SBMLResults structure.
SBML_ODESOLVER_API SBMLResultsMatrix_t *	Model_odeSolverBatch (Model_t *m, cvodeSettings_t *set, varySettings_t *vs)
	Solves the timeCourses for a SBML model, passed via a libSBML Model_t (must be level 2 SBML!!) structure and according to passed integration and parameter variation settings and returns the SBMLResultsMatrix containing SBMLResults for each varied parameter (columns) and each of its values (rows).
SBML_ODESOLVER_API SBMLResults_t *	SBMLResults_fromIntegrator (Model_t *m, integratorInstance_t *ii)
	Maps the integration results from internal data structures back to SBML structures (compartments, species, parameters and reaction fluxes).
SBML_ODESOLVER_API varySettings_t *	VarySettings_allocate (int nrparams, int nrdesignpoints)
	Allocate varySettings structure for settings for parameter variation batch runs: nrparams is the number of parameters to be varied, and nrdesignpoints is the number of values to be tested for each parameter.
SBML_ODESOLVER_API int	VarySettings_addParameter (varySettings_t *vs, char *id, char *rid, double start, double end)
	Add a parameter to the varySettings.
SBML_ODESOLVER_API const char *	VarySettings_getName (varySettings_t *vs, int i)
	Get the name (SBML ID) of the ith parameter,.
SBML_ODESOLVER_API const char *	VarySettings_getReactionName (varySettings_t *vs, int i)
	Get the name (SBML ID) of the reaction of the ith parameter,.
SBML_ODESOLVER_API int	VarySettings_setName (varySettings_t *vs, int i, char *id, char *rid)
	Set the id (SBML ID) of the ith parameter,.
SBML_ODESOLVER_API double	VarySettings_getValue (varySettings_t *vs, int i, int j)
	Get the jth value of the ith parameter,.
SBML_ODESOLVER_API void	VarySettings_setValue (varySettings_t *vs, int i, int j, double value)
	Set the jth value of the ith parameter,.
SBML_ODESOLVER_API void	VarySettings_dump (varySettings_t *vs)
	Print all parameters and their values in varySettings.
SBML_ODESOLVER_API void	VarySettings_free (varySettings_t *vs)
	Frees varySettings structure.
int	VarySettings_addParameterSet (varySettings_t *vs, double **designpoints, char **id, char **rid)

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