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The following assumes you have the barriers and treekin programs installed. If not, the current release can be found at http://www.tbi.univie.ac.at/RNA/Barriers/. Installation proceeds as shown for the ViennaRNA Package in section 2.4. One problem that often occurs during treekin installation is the dependency on blas and lapack packages which is not carefully checked. For further information according to the barriers and treekin program also see the website.