Barriers - Changelog
Version 1.8.x
1.8.1
-
- Fix connected component option
- Update connected component description
- Fix various mixed usages of signed/unsigned types
- Replace hash table implementation with one that uses separate chaining with linked lists instead of simple linear probing
- Refrain from installing
get_hashbits.plsince this is only required at compile-time - Refactor installation process of Perl 5 scripts and Perl 5 module
1.8.0
-
- Fix command line argument parsing
- Fix potentially running into infinite loops
- Change data type for minima indices to unsigned long
- Fix connected component output and help message
- Add command line parameters to specify rate file names
- Abort if number of input lines exceeds 2/3 of hash size
- Re-integrate command line parameter to specify mapped structure output
- Fix several memory leaks
- Always print graph and move set options to
STDERRunless--quietoption is provided - Use Markdown files for
ChangeLogandREADME - Add alternative
RNA2graph and move set implementation by Felix Kuehnl (may be removed again in an upcoming version)
Version 1.7.x
1.7.0
-
- Disable Shift moves by default
- Added
noLP-ratefunctionality - Added ligand binding functionality
- Added
/scripts/crossrates.plfor post-processing ligand data - Allow up to 34 HASHBITS in
configure.ac(default 27)
Version 1.6.x
1.6.0
-
- Add functionality to map structures to their corresponding macro states.
- Allow for writing the output of
--mapstructo a file instead ofstderr - ...tons of other updates
Version 1.5.x
1.5.2
-
- Initial release.