Deprecated Interface for (Re-)folding Paths, Saddle Points, and Energy Barriers
Typedefs
-
typedef struct vrna_path_s path_t
- #include <ViennaRNA/landscape/paths.h>
Old typename of vrna_path_s.
- Deprecated:
Use vrna_path_t instead!
Functions
-
int find_saddle(const char *seq, const char *s1, const char *s2, int width)
- #include <ViennaRNA/landscape/findpath.h>
Find energy of a saddle point between 2 structures (search only direct path)
- Deprecated:
Use vrna_path_findpath_saddle() instead!
- Parameters:
seq – RNA sequence
s1 – A pointer to the character array where the first secondary structure in dot-bracket notation will be written to
s2 – A pointer to the character array where the second secondary structure in dot-bracket notation will be written to
width – integer how many strutures are being kept during the search
- Returns:
the saddle energy in 10cal/mol
-
void free_path(vrna_path_t *path)
- #include <ViennaRNA/landscape/findpath.h>
Free memory allocated by get_path() function.
- Deprecated:
Use vrna_path_free() instead!
- Parameters:
path – pointer to memory to be freed
-
vrna_path_t *get_path(const char *seq, const char *s1, const char *s2, int width)
- #include <ViennaRNA/landscape/findpath.h>
Find refolding path between 2 structures (search only direct path)
- Deprecated:
Use vrna_path_findpath() instead!
- Parameters:
seq – RNA sequence
s1 – A pointer to the character array where the first secondary structure in dot-bracket notation will be written to
s2 – A pointer to the character array where the second secondary structure in dot-bracket notation will be written to
width – integer how many strutures are being kept during the search
- Returns:
direct refolding path between two structures
-
typedef struct vrna_path_s path_t