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B2MT

NAME

b2mt − produce coordinates for a mountain plot from bracket notation

SYNOPSIS

  b2mt.pl < seq.fold > mountain.dat

DESCRIPTION

read a secondary structures in bracket notation as output by RNAfold, and compute coordinates for a mountain plot as introduced by Pauline Hogeweg. The output is suitable for graphing with xmgrace, e.g.: " RNAfold < foo.seq | b2mt.pl | xmgrace −pipe"

AUTHOR

Ivo L. Hofacker <ivo@tbi.univie.ac.at>