b2mt − produce coordinates for a mountain plot from bracket notation
b2mt.pl < seq.fold > mountain.dat
read a secondary structures in bracket notation as output by RNAfold, and compute coordinates for a mountain plot as introduced by Pauline Hogeweg. The output is suitable for graphing with xmgrace, e.g.: " RNAfold < foo.seq | b2mt.pl | xmgrace −pipe"
Ivo L. Hofacker <email@example.com>