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NAME − produce a colored mountain plot of a consensus structure


DESCRIPTION reads a color dot plot as produced by either "RNAalifold −p" or "alidot −p" and writes a postscript colored mountain plot to stdout.

In the mountain plot a colored trapez with baseline from position i to j represents the pair (i,j) in the consensus structure. The color of the trapez encodes the sequence variation at that pair: Red marks pairs with no sequence variation; ochre, green, turquoise, blue, and violet mark pairs with 2,3,4,5,6 different tpyes of pairs, respectively.