COLORRNA

NAME

colorrna − colorize an alirna.ps file

SYNOPSIS

   colorrna.pl alirna.ps alidot.ps > colorRNA.ps

DESCRIPTION

colorrna reads an RNA secondary structure plot and a dot plot containing pair probabilities and covariance annotation as, produced by "RNAalifold −p", and writes a new secondary structure plot with color annotated seqence annotation to stdout. The color annotation is taken directly from the color dot plot file.

AUTHOR

Ivo L. Hofacker <ivo@tbi.univie.ac.at> Stefan Washietl <wash@tbi.univie.ac.at>