colorrna − colorize an alirna.ps file
colorrna.pl alirna.ps alidot.ps > colorRNA.ps
colorrna reads an RNA secondary structure plot and a dot plot containing pair probabilities and covariance annotation as, produced by "RNAalifold −p", and writes a new secondary structure plot with color annotated seqence annotation to stdout. The color annotation is taken directly from the color dot plot file.
Ivo L. Hofacker <email@example.com> Stefan Washietl <firstname.lastname@example.org>