cvodedata.c File Reference

#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <sbml/SBMLTypes.h>
#include <sbml/Model.h>
#include "sbmlsolver/cvodedata.h"
#include "sbmlsolver/integratorInstance.h"
#include "sbmlsolver/integratorSettings.h"
#include "sbmlsolver/odeModel.h"
#include "sbmlsolver/processAST.h"
#include "sbmlsolver/solverError.h"
#include "sbmlsolver/variableIndex.h"

Include dependency graph for cvodedata.c:

Functions
SBML_ODESOLVER_API cvodeData_t *	CvodeData_create (odeModel_t *om)
	Creates cvodeData from an odeModel and initial values from the original SBML model.
SBML_ODESOLVER_API void	CvodeData_initializeValues (cvodeData_t *data)
	Writes values from the input SBML model into the data structure.
SBML_ODESOLVER_API void	CvodeData_free (cvodeData_t *data)
	Frees cvodeData.
SBML_ODESOLVER_API int	CvodeResults_getNout (cvodeResults_t *results)
	Returns the number of time points for which results exist.
SBML_ODESOLVER_API double	CvodeResults_getTime (cvodeResults_t *results, int n)
	Returns the time point number n, where 0 <= n < CvodeResults_getNout.
SBML_ODESOLVER_API double	CvodeResults_getValue (cvodeResults_t *results, variableIndex_t *vi, int timestep)
	Returns the value of a variable or parameter of the odeModel at time step timestep via its variableIndex, where 0 <= timestep < CvodeResults_getNout, and the variableIndex can be retrieved from the input odeModel.
SBML_ODESOLVER_API double	CvodeResults_getSensitivityByNum (cvodeResults_t *results, int value, int parameter, int timestep)
	Returns the sensitivity of ODE variable y to parameter p at timestep nr.
SBML_ODESOLVER_API double	CvodeResults_getSensitivity (cvodeResults_t *results, variableIndex_t *y, variableIndex_t *p, int timestep)
	Returns the sensitivity of ODE variable y to parameter p at timestep nr.
SBML_ODESOLVER_API void	CvodeResults_free (cvodeResults_t *results)
	Frees results structure cvodeResults filled by the CVODE integrator.
int	CvodeData_initialize (cvodeData_t *data, cvodeSettings_t *opt, odeModel_t *om)
int	CvodeResults_allocateSens (cvodeResults_t *results, int neq, int nsens, int nout)
cvodeResults_t *	CvodeResults_create (cvodeData_t *data, int nout)

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Function Documentation

int CvodeData_initialize (  cvodeData_t *  data, cvodeSettings_t *  opt, odeModel_t *  om )

int CvodeResults_allocateSens (  cvodeResults_t *  results, int  neq, int  nsens, int  nout )

cvodeResults_t* CvodeResults_create (  cvodeData_t *  data, int  nout )

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