cvodedata.h File Reference

#include "nvector_serial.h"
#include <stdio.h>
#include <sbml/SBMLTypes.h>
#include "sbmlsolver/cvodedatatype.h"
#include "sbmlsolver/odemodeldatatype.h"
#include "sbmlsolver/integratorSettings.h"
#include "sbmlsolver/exportdefs.h"
#include "sbmlsolver/odeModel.h"

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Data Structures
struct	cvodeResults
	Stores CVODE specific integration results, data correspond to the respective values in cvodeData. More...
struct	cvodeData
	Contains the data needed for AST formula evaluation and odeModel integration and usually corresponds to an odeModel. More...
Functions
SBML_ODESOLVER_API cvodeData_t *	CvodeData_create (odeModel_t *)
	Creates cvodeData from an odeModel and initial values from the original SBML model.
SBML_ODESOLVER_API void	CvodeData_initializeValues (cvodeData_t *)
	Writes values from the input SBML model into the data structure.
SBML_ODESOLVER_API void	CvodeData_free (cvodeData_t *)
	Frees cvodeData.
SBML_ODESOLVER_API double	CvodeResults_getTime (cvodeResults_t *, int)
	Returns the time point number n, where 0 <= n < CvodeResults_getNout.
SBML_ODESOLVER_API double	CvodeResults_getValue (cvodeResults_t *, variableIndex_t *, int)
	Returns the value of a variable or parameter of the odeModel at time step timestep via its variableIndex, where 0 <= timestep < CvodeResults_getNout, and the variableIndex can be retrieved from the input odeModel.
SBML_ODESOLVER_API int	CvodeResults_getNout (cvodeResults_t *)
	Returns the number of time points for which results exist.
SBML_ODESOLVER_API double	CvodeResults_getSensitivityByNum (cvodeResults_t *, int value, int parameter, int timestep)
	Returns the sensitivity of ODE variable y to parameter p at timestep nr.
SBML_ODESOLVER_API double	CvodeResults_getSensitivity (cvodeResults_t *, variableIndex_t *y, variableIndex_t *p, int timestep)
	Returns the sensitivity of ODE variable y to parameter p at timestep nr.
SBML_ODESOLVER_API void	CvodeResults_free (cvodeResults_t *)
	Frees results structure cvodeResults filled by the CVODE integrator.
int	CvodeData_initialize (cvodeData_t *, cvodeSettings_t *, odeModel_t *)
cvodeResults_t *	CvodeResults_create (cvodeData_t *, int)
int	CvodeResults_allocateSens (cvodeResults_t *, int neq, int nsens, int nout)

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Function Documentation

int CvodeData_initialize (  cvodeData_t *  , cvodeSettings_t *  , odeModel_t *  )

cvodeResults_t* CvodeResults_create (  cvodeData_t *  , int  )

int CvodeResults_allocateSens (  cvodeResults_t *  , int  neq, int  nsens, int  nout )

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