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The Program RNAcofold
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A short Tutorial on
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Designing a Switch
RNA-RNA Interactions
A common problem is the prediction of binding sites between two RNAs, as in the case of miRNA-mRNA interactions. Following tools of the
ViennaRNA Package
can be used to calculate base pairing probabilities.
Subsections
The Program
RNAcofold
Two Sequences one Structure
Secondary Structure Plot and Dot Plot
Concentration Dependency
Concentration Dependency
Concentration Dependency plot
Finding potential binding sites with
RNAduplex
Binding site prediction with
RNAduplex
Sven Findeiss 2013-11-22
