Theoretical Biochemistry Group

Institute for Theoretical Chemistry

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TBI - Bernhard Thiel

Picture Foto by R.Neuböck

Curriculum Vitae

Since 2019 Software engineer at VisoTech
2015-2019 "Coarse grained RNA 3D structure prediction with ERNWIN"
PhD student at the Theoretical Biochemistry Group, University of Vienna.
2014/15 "In silico annotation of noncoding RNAs and their targets"
Research assistent (Wissenschaftlicher Projektmitarbeiter) at the Theoretical Biochemistry Group, University of Vienna.
2013/14 Volunteer in the Philippines
at the SPCC children's rights project in Manila; voluntary placement facilitated by the Dreikoenigsaktion der katholischen Jungschar, 1160 Vienna
2011-13 MSc in Chemistry.
Master thesis at the Theoretical Biochemistry Group, University of Vienna.
2008-11 BSc in Chemistry.
Bachelor Thesis in physical-organic chemistry
2007/08 Zivildienst (Civil Service)
2007 Matura BG IX - Wasagasse
Humanistisches Gymnasium (Classical secondary school with Latin and Ancient Greek)

Publication List

Bernhard C. Thiel, Irene K. Beckmann, P. Kerpedjiev and Ivo L. Hofacker
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. [version 1; referees: awaiting peer review]
F1000Research 2019, 8:287 doi: 10.12688/f1000research.18458.1
Bernhard C. Thiel, Roman Ochsenreiter, Veerendra P. Gadekar, Andrea Tanzer and Ivo L. Hofacker
RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates
Genes 9 (8), 392, 2018 doi: 10.3390/genes9080392
Maria Waldl*, Bernhard C. Thiel*, Roman Ochsenreiter, Alexander Holzenleiter, João Victor de Araujo Oliveira, Maria Emília M. T. Walter, Michael T. Wolfinger and Peter F. Stadler
TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes
Genes 9 (8), 372, 2018 doi: 10.3390/genes9080372
Bernhard C. Thiel, Christoph Flamm and Ivo L. Hofacker
RNA structure prediction: from 2D to 3D
Emerging Topics in Life Sciences 1 (3), 2017, pp. 275-285 doi: 10.1042/ETLS20160027
Bernhard C. Thiel
Enzyme Mechanisms as Synthesis Planning Problems
Wien, University of Vienna. (2013), Master Thesis
Martin Mann and Bernhard Thiel.
Kekule structure enumeration yields unique SMILES
In: Proceedings of WCB13 - Workshop on Constraint Based Methods for Bioinformatics. Ed. by Alessandro Dal Palu and Dovier Agostino. Uppsala, Sweden, 2013, pp. 57 - 65
Jean-Luc Mieusset, Bernhard Thiel, Michael Abraham, Mirjana Pačar, and Udo H. Brinker.
Decomposition of an oxodiazirine: free versus incarcerated within the cavities of two α-cyclodextrins
In: Tetrahedron Letters 54.7 (2013), pp. 681 - 683 doi:10.1016/j.tetlet.2012.12.008