TBI - Bernhard Thiel

Foto by R.Neuböck

Curriculum Vitae

Since 2019	Software engineer at VisoTech
2015-2019	"Coarse grained RNA 3D structure prediction with ERNWIN" PhD student at the Theoretical Biochemistry Group, University of Vienna.
2014/15	"In silico annotation of noncoding RNAs and their targets" Research assistent (Wissenschaftlicher Projektmitarbeiter) at the Theoretical Biochemistry Group, University of Vienna.
2013/14	Volunteer in the Philippines at the SPCC children's rights project in Manila; voluntary placement facilitated by the Dreikoenigsaktion der katholischen Jungschar, 1160 Vienna
2011-13	MSc in Chemistry. Master thesis at the Theoretical Biochemistry Group, University of Vienna.
2008-11	BSc in Chemistry. Bachelor Thesis in physical-organic chemistry
2007/08	Zivildienst (Civil Service)
2007	Matura BG IX - Wasagasse Humanistisches Gymnasium (Classical secondary school with Latin and Ancient Greek)

Software

Github	Bernhard10
Webserver	Coarse-grained RNA 3D structure prediction with Ernwin online.

Publication List

Bernhard C. Thiel, Irene K. Beckmann, P. Kerpedjiev and Ivo L. Hofacker
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. [version 1; referees: awaiting peer review]
F1000Research 2019, 8:287 doi: 10.12688/f1000research.18458.1

Bernhard C. Thiel, Roman Ochsenreiter, Veerendra P. Gadekar, Andrea Tanzer and Ivo L. Hofacker
RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates
Genes 9 (8), 392, 2018 doi: 10.3390/genes9080392

Maria Waldl*, Bernhard C. Thiel*, Roman Ochsenreiter, Alexander Holzenleiter, João Victor de Araujo Oliveira, Maria Emília M. T. Walter, Michael T. Wolfinger and Peter F. Stadler
TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes
Genes 9 (8), 372, 2018 doi: 10.3390/genes9080372

Bernhard C. Thiel, Christoph Flamm and Ivo L. Hofacker
RNA structure prediction: from 2D to 3D
Emerging Topics in Life Sciences 1 (3), 2017, pp. 275-285 doi: 10.1042/ETLS20160027

Bernhard C. Thiel
Enzyme Mechanisms as Synthesis Planning Problems
Wien, University of Vienna. (2013), Master Thesis http://www.tbi.univie.ac.at/newpapers/pdfs/TBI-m-2013-1.pdf

Martin Mann and Bernhard Thiel.
Kekule structure enumeration yields unique SMILES
In: Proceedings of WCB13 - Workshop on Constraint Based Methods for Bioinformatics. Ed. by Alessandro Dal Palu and Dovier Agostino. Uppsala, Sweden, 2013, pp. 57 - 65 http://cp2013.a4cp.org/sites/default/files/uploads/WCB13_proceedings.pdf

Jean-Luc Mieusset, Bernhard Thiel, Michael Abraham, Mirjana Pačar, and Udo H. Brinker.
Decomposition of an oxodiazirine: free versus incarcerated within the cavities of two α-cyclodextrins
In: Tetrahedron Letters 54.7 (2013), pp. 681 - 683 doi:10.1016/j.tetlet.2012.12.008