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TBI WORKING PAPERS 2009

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TBI Working Papers are usually works in progress or papers submitted for publication in refereed scientific journals. They contain accounts of the scientific work of the author(s) and do not necessarily represent the views of the TBI.

© NOTICE: All papers are copyrighted by the authors; revised versions that appear in print are copyrighted by the publication in which each appears.
If you would like to use all or a portion of any paper, please contact the author.
A Sequence-to-Function Map for Ribozyme-catalyzed Metabolisms

Author: Alexander Ullrich and Christoph Flamm
ID: TBI-p-2009-1
Status: in press
Abstract:         [Abstract]
PDF: [Link to PDF]

BarMap: RNA Folding on Dynamics Energy Landscapes

Author: Ivo L. Hofacker, Christoph Flamm, Christian Heine, Michael T. Wolfinger, Gerik Scheuermann, Peter F. Stadler
ID: TBI-p-2009-2
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Supplements: [Link to Supplements]
Link to publication: [RNA. 2010 Jul;16(7):1308-16.]

Semantics and Ambiguity of Stochastic RNA Family Models

Author: Robert Giegerich and Christian Hoener zu Siederdissen
ID: TBI-p-2009-3
Status: in press
Abstract:         [Abstract]
PDF: [Link to PDF]

From consensus structure prediction to RNA gene finding

Author: Stephan H Bernhart, Ivo L Hofacker
ID: TBI-p-2009-4
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Link to publication: [Briefings in Functional Genomics and Proteomics 2009 8(6):461-471; doi:10.1093/bfgp/elp043]

2D Projections of RNA folding Landscapes

Author: Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker
ID: TBI-p-2009-5
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]

Inverse Problems in Systems Biology

Author: Heinz W Engl, Christoph Flamm, Philipp Kügler, James Lu, Stefan Müller, Peter Schuster
ID: TBI-p-2009-6
Status: in press
Abstract:         [Abstract]
PDF: [Link to PDF]

RNAZ 2.0: IMPROVED NONCODING RNA DETECTION.

Author: Gruber AR, Findeiß S, Washietl S, Hofacker IL, Stadler PF
ID: TBI-p-2009-7
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Supplements: [Link to Supplements]
Link to publication: [Pac. Symp. Biocomput. 5:69-79, (2010)]

RNAsnoop: efficient target prediction for box H/ACA snoRNAs

Author: Hakim Tafer, Stephanie Kehr, Jana Hertel, Ivo L. Hofacker, Peter F. Stadler
ID: TBI-p-2009-8
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Link to publication: [Bioinformatics 26: 610-616 (2010)]