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TBI WORKING PAPERS 2010

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TBI Working Papers are usually works in progress or papers submitted for publication in refereed scientific journals. They contain accounts of the scientific work of the author(s) and do not necessarily represent the views of the TBI.

© NOTICE: All papers are copyrighted by the authors; revised versions that appear in print are copyrighted by the publication in which each appears.
If you would like to use all or a portion of any paper, please contact the author.
Evolution of Metabolic Networks: A Computational Framework

Author: Christoph Flamm, Alexander Ullrich, Heinz Ekker, Martin Mann, Daniel Högerl, Markus Rohrschneider, Sebastian Sauer, Gerik Scheuermann, Konstantin Klemm, Ivo L. Hofacker, Peter F. Stadler
ID: TBI-p-2010-1
Status: submitted
Abstract:         [Abstract]
PDF: [Link to PDF]
Supplements: [Link to Supplements]

Bcheck: a wrapper tool for detecting RNase P RNA genes

Author: Dilmurat Yusuf, Manja Marz, Peter F. Stadler, Ivo L. Hofacker
ID: TBI-p-2010-2
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Supplements: [Link to Supplements]
Link to publication: [BMC Genomics. 2010 Jul 13;11:432.]

In silico Evolution of early Metabolism

Author: Alexander Ullrich, Christoph Flamm, Markus Rohrschneider, Peter F Stadler
ID: TBI-p-2010-3
Status: in press
Abstract:         [Abstract]
PDF: [Link to PDF]

RNALfoldz: efficient prediction of thermodynamically stable, local secondary structures

Author: Andreas R. Gruber, Stephan H. Bernhart, You Zhou, and Ivo L. Hofacker
ID: TBI-p-2010-4
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Supplements: [Link to Supplements]

Discriminatory Power of RNA Family Models

Author: Christian Hoener zu Siederdissen and Ivo L. Hofacker
ID: TBI-p-2010-5
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Supplements: [Link to Supplements]
Link to publication: [Bioinformatics (2010), 26, (18): i453-i459. ]

Nematode sbRNAs: homologs of vertebrate Y RNAs

Author: Ilenia Boria , Andreas R. Gruber , Andrea Tanzer , Stephan H. Bernhart, Ronny Lorenz, Michael M. Mueller, Ivo L. Hofacker, Peter F. Stadler
ID: TBI-p-2010-6
Status: published
Abstract:         [Abstract]
PDF: [Link to PDF]
Link to publication: [J Mol Evol. 70(4):346-58 (2010).]