#include <MC_MC_Node.hh>

Inheritance diagram for ggl::chem::MC_MC_NodeLabel:

Public Types
enum	CompareType { ALLOWED, FORBIDDEN }

typedef MC_NodeLabel::LabelSet	LabelSet
	the type that defines a set of labels More...

Public Member Functions
virtual MC_MC_NodeLabel *	clone (void) const

virtual bool	isConstrainedLabel (const std::string &label) const

virtual bool	isConstraining (const size_t nodeID) const

virtual bool	isValidMatch (const Pattern_Interface &pattern, const Graph_Interface &target, const Match &match) const

virtual bool	isValidMatch (const sgm::Pattern_Interface &pattern, const sgm::Graph_Interface &target, const size_t matchedTargetID) const

	MC_MC_NodeLabel ()

	MC_MC_NodeLabel (const size_t constrainedNodeID)

	MC_MC_NodeLabel (const size_t constrainedNodeID, const LabelSet &nodeLabels)

	MC_MC_NodeLabel (const size_t constrainedNodeID, const LabelSet &nodeLabels, const CompareType &compareType)

	MC_MC_NodeLabel (const MC_NodeLabel &toCopy)

	MC_MC_NodeLabel (const MC_MC_NodeLabel &toCopy)

virtual bool	operator== (const sgm::Pattern_Interface::Match_Constraint &toCompare) const

virtual bool	operator== (const MC_MC_NodeLabel &toCompare) const

virtual bool	operator== (const MC_NodeLabel &toCompare) const

virtual MC_MC_NodeLabel *	remap (const sgm::Match &old2newIndexMapping, const size_t unmatchedIndex=UINT_MAX)

virtual	~MC_MC_NodeLabel ()
	destruction More...

Data Fields
CompareType	compareType

size_t	constrainedNodeID
	the node ID to be constrained More...

LabelSet	nodeLabels

Detailed Description

A an sgm::MC_NodeLabel constraint for MoleculeComponent descriptions. Therefore, it assumes valid (complex) atom labels for all nodes.

NOTE: Only the atom identifier is used for comparisons. All charge, class, or proton information is ignored.

NOTE: This constraint is only useful if the according pattern node shows a wildcard label such that it can be matched on any target node.

Author: Martin Mann - http://www.bioinf.uni-freiburg.de/~mmann/

Definition at line 372 of file MC_MC_Node.hh.

Member Typedef Documentation

typedef MC_NodeLabel::LabelSet ggl::chem::MC_MC_NodeLabel::LabelSet

Definition at line 377 of file MC_MC_Node.hh.

Member Enumeration Documentation

enum sgm::MC_NodeLabel::CompareType

inherited

Enumerator
ALLOWED
FORBIDDEN

Definition at line 597 of file MC_Node.hh.

Constructor & Destructor Documentation

ggl::chem::MC_MC_NodeLabel::MC_MC_NodeLabel ( )

inline

Default construction of the match constraint : undefined values are initialized with INT_MAX or empty sets

Definition at line 398 of file MC_MC_Node.hh.

ggl::chem::MC_MC_NodeLabel::MC_MC_NodeLabel ( const size_t constrainedNodeID )

inline

construction where the allowed node labels are empty

Parameters

constrainedNodeID the node ID to be constrained

Definition at line 404 of file MC_MC_Node.hh.

ggl::chem::MC_MC_NodeLabel::MC_MC_NodeLabel	(	const size_t	constrainedNodeID,
		const LabelSet &	nodeLabels
	)

inline

construction where the allowed node labels are empty

Parameters

constrainedNodeID	the node ID to be constrained
nodeLabels	the allowed node labels to be matched on

Definition at line 411 of file MC_MC_Node.hh.

ggl::chem::MC_MC_NodeLabel::MC_MC_NodeLabel	(	const size_t	constrainedNodeID,
		const LabelSet &	nodeLabels,
		const CompareType &	compareType
	)

inline

construction where the allowed node labels are empty

Parameters

constrainedNodeID	the node ID to be constrained
nodeLabels	the allowed node labels to be matched on
compareType	the type of comparison to be applied

Definition at line 421 of file MC_MC_Node.hh.

ggl::chem::MC_MC_NodeLabel::MC_MC_NodeLabel ( const MC_NodeLabel & toCopy )

inline

copy construction

Parameters

toCopy the MC_NodeLabel object to copy

Definition at line 429 of file MC_MC_Node.hh.

ggl::chem::MC_MC_NodeLabel::MC_MC_NodeLabel ( const MC_MC_NodeLabel & toCopy )

inline

copy construction

Parameters

toCopy the MC_MC_NodeLabel object to copy

Definition at line 435 of file MC_MC_Node.hh.

virtual ggl::chem::MC_MC_NodeLabel::~MC_MC_NodeLabel ( )

inlinevirtual

Definition at line 441 of file MC_MC_Node.hh.

Member Function Documentation

virtual MC_MC_NodeLabel* ggl::chem::MC_MC_NodeLabel::clone ( void ) const

inlinevirtual

Creates a new MC_NodeLabel heap object that equals the current object. NOTE: YOU have to delete it later on! There is no garbage collection!

Returns: a new allocated MC_NodeLabel object that equals *this

Reimplemented from sgm::MC_NodeLabel.

Definition at line 515 of file MC_MC_Node.hh.

virtual bool sgm::MC_NodeLabel::isConstrainedLabel ( const std::string & label ) const

inlinevirtualinherited

Checks whether or not a given label is part of the constraint information. This check is needed by some parsers to verify the wildcard definition.

Parameters

label the label of interest

Returns: true if the label is part of the constraint; false otherwise

Implements sgm::Pattern_Interface::Match_Constraint.

Definition at line 727 of file MC_Node.hh.

virtual bool sgm::MC_Node::isConstraining ( const size_t nodeID ) const

inlinevirtualinherited

Checks whether or not this constraint covers the node with the given ID.

Parameters

nodeID the ID of the node of interest

Returns: true if the node is covered by the constraint; false otherwise

Implements sgm::Pattern_Interface::Match_Constraint.

Definition at line 74 of file MC_Node.hh.

virtual bool sgm::MC_Node::isValidMatch	(	const Pattern_Interface &	pattern,
		const Graph_Interface &	target,
		const Match &	match
	)		const

inlinevirtualinherited

Checks whether or not a match on a given target fulfills the additional node constraint for the pattern matching.

Parameters

pattern	the pattern graph that was matched
target	the target graph the pattern was matched on
match	the match information for the left side pattern of the pattern on the target graph

Returns: true if the match is valid; false if the constraint is violated

Implements sgm::Pattern_Interface::Match_Constraint.

Definition at line 140 of file MC_Node.hh.

virtual bool ggl::chem::MC_MC_NodeLabel::isValidMatch	(	const sgm::Pattern_Interface &	pattern,
		const sgm::Graph_Interface &	target,
		const size_t	matchedTargetID
	)		const

inlinevirtual

Checks whether or not the matched node holds one of the allowed labels.

NOTE: If node labels are given, only checking the atom identifier, not the whole node label is checked against the label set.

Parameters

pattern	the pattern graph that was matched
target	the target graph the pattern was matched on
matchedTargetID	matched node index within the target graph

Returns: true if the match is valid; false if the constraint is violated

Reimplemented from sgm::MC_NodeLabel.

Definition at line 459 of file MC_MC_Node.hh.

virtual bool sgm::MC_Node::operator== ( const sgm::Pattern_Interface::Match_Constraint & toCompare ) const

inlinevirtualinherited

Equality comparison to another match constraint.

Parameters

toCompare the constraint to compare to

Returns: true if the constraints are equal; false otherwise

Implements sgm::Pattern_Interface::Match_Constraint.

Definition at line 154 of file MC_Node.hh.

virtual bool ggl::chem::MC_MC_NodeLabel::operator== ( const MC_MC_NodeLabel & toCompare ) const

inlinevirtual

Equality comparison to another match constraint.

Parameters

toCompare the constraint to compare to

Returns: true if the constraints are equal; false otherwise

Definition at line 559 of file MC_MC_Node.hh.

virtual bool sgm::MC_NodeLabel::operator== ( const MC_NodeLabel & toCompare ) const

inlinevirtualinherited

Equality comparison to another match constraint.

Parameters

toCompare the constraint to compare to

Returns: true if the constraints are equal; false otherwise

Definition at line 794 of file MC_Node.hh.

virtual MC_MC_NodeLabel* ggl::chem::MC_MC_NodeLabel::remap	(	const sgm::Match &	old2newIndexMapping,
		const size_t	unmatchedIndex = `UINT_MAX`
	)

inlinevirtual

Creates a new MC_NodeLabel heap object that equals the current object but uses the new indices given by old2newIndexMapping. NOTE: YOU have to delete it later on! There is no garbage collection!

Parameters

old2newIndexMapping	the index mapping to be used for the remapping
unmatchedIndex	an optional specific index that marks unmatched nodes within old2newIndexMapping. if this constrains one of these nodes, no remapping is done and NULL is returned

Returns: a new allocated MC_NodeLabel object

Reimplemented from sgm::MC_NodeLabel.

Definition at line 536 of file MC_MC_Node.hh.

Field Documentation

CompareType sgm::MC_NodeLabel::compareType

inherited

the type of comparison to be applied, i.e. if to ensure that the edge label is among the edgeLabels (ALLOWED) or that it is not present (FORBIDDEN)

Definition at line 612 of file MC_Node.hh.

size_t sgm::MC_Node::constrainedNodeID

inherited

Definition at line 45 of file MC_Node.hh.

LabelSet sgm::MC_NodeLabel::nodeLabels

inherited

the set of labels this node can be mapped on NOTE: if empty, no matching will be allowed !!!

Definition at line 607 of file MC_Node.hh.

The documentation for this class was generated from the following file:

src/ggl/chem/MC_MC_Node.hh

Public Types

Public Member Functions

Data Fields

Detailed Description

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Field Documentation