  ggl::chem::AromaticityPerception::AdjacencyComp | Comparator for edge processing order |
| ggl::chem::AromaticityPerception::AdjacencyData | |
| ggl::chem::SMILES_grammar::definition< ScannerT >::AtomInfo | |
| ggl::chem::MoleculeUtil::AtomLabelData | |
 AttrComparator | |
  sgm::VF2_MatchingHandler::LabelComparator | |
 sgm::GM_vf2::EdgeLabelComparator | |
| sgm::GM_vf2::NodeComparator | |
| sgm::SGM_vf2::EdgeLabelComparator | |
 sgm::SGM_vf2::NodeComparator | |
| binary_function | |
| ggl::Graph_GML_grammar::lt_edge | |
| ggl::Graph_GML_grammar::lt_node | |
| ggl::Rule_GML_grammar::lt_edge | |
| ggl::Rule_GML_grammar::lt_node | |
| ggl::chem::MoleculeUtil::BondLabelData | |
| char_parser | |
| ggl::chem::SMILES_grammar::definition< ScannerT >::atom1_parser | |
| ggl::chem::SMILES_grammar::definition< ScannerT >::atom2_parser | |
| ggl::chem::SMILES_grammar::definition< ScannerT >::bond_parser | |
| ggl::chem::SMILES_grammar::definition< ScannerT >::simpleSymbol_parser | |
| closure | |
| ggl::chem::SMILES_grammar::definition< ScannerT >::Atom_closure | Utility helper class for parsing |
| ggl::Graph_GML_grammar::keyvalue_closure | |
| ggl::Rule_GML_grammar::keyvalue_closure | |
| ggl::chem::MoleculeDecomposition::DecompositionReporter | |
| ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT > | The definition of the GML grammar |
| ggl::chem::SMILES_grammar::definition< ScannerT > | The definition of the SMILES grammar |
| ggl::Graph_GML_grammar::definition< ScannerT > | The definition of the GML grammar |
| ggl::Rule_GML_grammar::definition< ScannerT > | The definition of the GML grammar |
| sgm::RP_Hanser96::degree_sort | |
| ggl::DFS_ApplyRule::DFS_ABORTION | Dummy class to trigger DFS abortion via exception handling |
| ggl::DFS_ApplyRule::DFS_Visitor | |
| ggl::chem::GS_chem::edge_is_in_component | |
| sgm::Graph_Interface::Edge_iterator | |
| ggl::Rule::EdgeContextProperty | |
| EdgeDescriptor | |
| ggl::LeftSidePattern::EdgeDescriptor | |
| ggl::RightSidePattern::EdgeDescriptor | |
| sgm::Graph_Interface::EdgeDescriptor | |
| sgm::Graph_boost< GRAPH, NODE_LABEL_PROPERTY, EDGE_LABEL_PROPERTY, NODE_INDEX_PROPERTY >::EdgeDescriptor | |
| sgm::Graph_boostV_p< GRAPH, NODE_LABEL_PROPERTY, EDGE_LABEL_PROPERTY, NODE_INDEX_PROPERTY >::EdgeDescriptor | |
| sgm::SubGraph::EdgeDescriptor | |
| ggl::chem::EnergyCalculation | Interface molecule energy calculation |
| ggl::chem::EC_MoleculeDecomposition | Molecule energy ala Jankowski et al |
| ggl::chem::EnergyCalculationConstants | Constants for energy calculations |
| std::exception | STL class |
| std::logic_error | STL class |
| ggl::Rule_GML_error | Rule parsing error |
| grammar | |
| ggl::chem::MoleculeComponent_GML_grammar | MoleculeComponent parser |
| ggl::chem::SMILES_grammar | SMILES molecule parser |
| ggl::Graph_GML_grammar | Graph GML parser |
| ggl::Rule_GML_grammar | Graph grammar rule parser |
| ggl::Graph_GML_writer | Graph GML writer |
| ggl::Graph_GMLparser | Graph GML parser |
| ggl::Graph_gSpan_writer | Graph gSpan writer |
| ggl::Graph_GXL_writer | Graph GXL writer |
| sgm::Graph_Interface | Interface of graphs for graph matching |
| ggl::chem::ClassIDGraph | |
| ggl::LeftSidePattern | Rule left side pattern |
| ggl::chem::LeftSidePattern | LeftSidePattern graph of a ggl::chem::ChemRule |
| ggl::RightSidePattern | Rule right side graph |
| sgm::Graph_boost< GRAPH, NODE_LABEL_PROPERTY, EDGE_LABEL_PROPERTY, NODE_INDEX_PROPERTY > | Graph_Interface wrapper for boost graphs |
| sgm::Graph_boostV_p< GRAPH, NODE_LABEL_PROPERTY, EDGE_LABEL_PROPERTY, NODE_INDEX_PROPERTY > | Graph_Interface wrapper for set of boost graphs |
| sgm::SubGraph | Subgraph of a Graph_Interface for matching |
| sgm::SubGraphPattern | |
| ggl::Graph_Storage | Interface graph storage |
| ggl::chem::GS_chem | Interface molecule graph storage |
| ggl::chem::GS_MolCheck | Molecule correction graph storage |
| ggl::chem::GS_SMILES< STL_INSERTER > | SMILES graph storage |
| ggl::chem::GS_SMILES_MOL< SMILES_MOL_MAP > | SMILES graph storage using STL SMILES-Graph map |
| ggl::chem::GS_SMILES_MOLp< SMILES_MOL_MAP > | SMILES graph storage using STL SMILES-GraphPointer map |
| ggl::chem::GS_SMILES_OB< STL_INSERTER > | SMILES graph storage OpenBabel |
| ggl::chem::GS_SMILES_OB_MOL< SMILES_MOL_MAP > | SMILES graph storage OpenBabel using STL SMILES-Graph map |
| ggl::chem::GS_SMILES_OB_MOLp< SMILES_MOL_MAP > | SMILES graph storage OpenBabel using STL SMILES-GraphPointer map |
| ggl::chem::GS_SMILES_MOLp< Smiles2GraphMap > | |
| ggl::chem::MR_Reactions | Reaction match reporter |
| ggl::DFS_ApplyRule | |
| ggl::GS_STL_pushAllPT< STL_CONTAINER > | Stores new graph pointers in STL push-back container |
| ggl::GS_STL_pushAllT< STL_CONTAINER > | Graph storage within STL push-back container |
| ggl::GS_STL_pushUniquePT< STL_CONTAINER > | Unique storage of new graph pointers in STL push-back container |
| ggl::GS_STL_pushUniqueT< STL_CONTAINER > | Unique storage of graphs in STL push-back container |
| ggl::GS_stream | Graph storage within output stream |
| sgm::GraphMatching | Interface graph isomorphism |
| sgm::GM_vf2 | VF2 graph isomorphism |
| sgm::hash_string | |
| ggl::Graph_GML_grammar::keys_map | |
| ggl::Rule_GML_grammar::keys_map | |
| sgm::Pattern_Interface::Match_Constraint | |
| sgm::MC_Edge | Interface edge match constraint |
| sgm::MC_EdgeLabel | Constrains edge labels within a match |
| sgm::MC_NoEdge | Forbids an edge within a match |
| sgm::MC_Node | Interface node match constraints |
| ggl::chem::MoleculeDecomposition::MC_MC_RingNode | |
| sgm::MC_NodeAdjacency | Constrains a node's adjacency for a match |
| ggl::chem::MC_MC_NodeAdjacency | Match constraints of MoleculeComponents |
| sgm::MC_NodeLabel | Constrains a node's labels for a matching |
| ggl::chem::MC_MC_NodeLabel | |
| sgm::Match_Reporter | Interface graph match reporting |
| ggl::chem::MoleculeDecomposition | Molecule energy estimation ala Jankowski et al |
| ggl::chem::MR_Reactions | Reaction match reporter |
| ggl::MR_ApplyRule | Graph Grammar Rule application for each reported match |
| sgm::MR_Counting | Counts matches |
| sgm::MR_StoringInsertT< STL_INSERT_CONTAINER > | |
| sgm::MR_StoringT< STL_PUSHBACK_CONTAINER > | Stores each match in an STL container |
| sgm::MR_stream | Writes each match to an output stream |
| sgm::MR_SymmBreak | Symmetry breaking among matches |
| ggl::chem::MoleculeComponent | Molecule component definition |
| ggl::chem::MoleculeComponent_GMLparser | MoleculeComponent parser |
| ggl::chem::MoleculeOB | OpenBabel molecule object port |
| ggl::chem::MoleculeUtil | Molecule utility factory |
| ggl::chem::GS_chem::node_is_in_component | |
| ggl::Rule::NodeContextProperty | |
| sgm::VF2_MatchingHandler::NodeData | Data handler for node information used for node comparison |
| ggl::chem::SMILESwriter::NodeData | |
| ggl::Rule::NodeRightLabelProperty | |
| sgm::NSPDK_port | Ports NSPDK functionality to SGM |
| sgm::Graph_Interface::OutEdge_iterator | |
| sgm::Pattern_Automorphism | Automorphism description for patterns |
| sgm::PA_OrderCheck | Order based automorphism exclusion |
| sgm::Pattern_Interface | Pattern description to be matched |
| ggl::LeftSidePattern | Rule left side pattern |
| sgm::Pattern | |
| sgm::SubGraphPattern | |
| ggl::chem::MoleculeDecomposition::priority_order | |
| ggl::chem::Reaction | Reaction description |
| ggl::chem::ReactionRateCalculation | Interface reaction rate calculation |
| ggl::chem::RRC_ArrheniusLaw | Arrhenius law based reaction rate calculation |
| ggl::chem::RRC_Fixed | |
| ggl::chem::RRC_TState | |
| ggl::chem::AromaticityPerception::RingDescriptor | |
| ggl::chem::MoleculeDecomposition::RingDescriptor | Descriptor of a ring within the molecule |
| ggl::chem::MoleculeComponent::RingFragment | Ring fragment description |
| sgm::RP_Hanser96::RingInfo | Information on the current ring part |
| sgm::RingPerception | Interface ring enumeration |
| sgm::RP_Hanser96 | Ring enumeration ala Hanser et al |
| sgm::GraphScaffold | |
| sgm::RingReporter | Interface to report found rings |
| ggl::chem::AromaticityPerception | Interface - aromaticity prediction |
| ggl::chem::AP_disabled | Disables aromaticity prediction |
| ggl::chem::AP_NSPDK | NSPDK-based aromaticity prediction |
| ggl::chem::MoleculeDecomposition | Molecule energy estimation ala Jankowski et al |
| sgm::GraphScaffold::RR_Annotation | |
| sgm::RP_Hanser96::LoopBondReporter | |
| ggl::chem::AromaticityPerception::RingSizeLess | |
| ggl::Rule_ConCodes | Rule consistency codes |
| ggl::chem::ChemRule_Constants | Consistency codes and constants |
| ggl::chem::ChemRule | Chemical graph grammar rule |
| ggl::Rule | |
| ggl::chem::ChemRule | Chemical graph grammar rule |
| ggl::Rule_GML_writer | Rule GML writer |
| ggl::Rule_GMLparser | Graph grammar rule parser |
| ggl::Rule::RuleCnP | |
| ggl::Rule::RuleSide | |
| ggl::chem::SMILESparser | SMILES molecule parser |
| ggl::chem::SMILESwriter | Molecule to SMILES writer |
| ggl::chem::SMILESwriterOB | Molecule to SMILES writer via OpenBabel |
| sgm::SubGraphMatching | Interface for subgraph monomorphism |
| sgm::SGM_vf2 | VF2-based subgraph matching |
| SvmModel | |
| ggl::chem::AP_NSPDK_Model | NSPDK aromaticity model |
| ggl::chem::ChemRule::TransitionState | |
| ggl::chem::ReactionTransitionState | Transition state of a reaction |
| sgm::VF2_MatchingHandler::VF2_match_handler | Handles match reporting from VF2-engine |
| sgm::VF2_MatchingHandler | General VF2-matching functionalities |
| sgm::GM_vf2 | VF2 graph isomorphism |
| sgm::SGM_vf2 | VF2-based subgraph matching |
