ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT > Struct Template Reference

The definition of the GML grammar.

#include <MoleculeComponent_GML_grammar.hh>

Public Member Functions
	definition (const MoleculeComponent_GML_grammar &self)
NS_BOOSTSPIRIT::rule< ScannerT > const &	start () const
	start parsing More...

Protected Types
enum	WhatList {   Fill_constrAdj_NL, Fill_constrAdj_EL, Fill_constrLabel_NL, Fill_compIDs,   Fill_ringFragments }

Protected Member Functions
void	clear_toFill (void)
void	final_checks (void) throw (std::invalid_argument)
void	insert_to_list (WhatList list)
void	store_constrAdj (void)
void	store_constrLabel (void)
void	store_edge (void) throw (std::invalid_argument)
void	store_node (void) throw (std::invalid_argument)

Protected Attributes
NS_BOOSTSPIRIT::rule< ScannerT >	compIDs
MC_MC_NodeAdjacency	constrAdj
char	constrAdjOp
NS_BOOSTSPIRIT::rule< ScannerT >	constrainAdjacency
NS_BOOSTSPIRIT::rule< ScannerT >	constrainLabel
MC_MC_NodeLabel	constrLabel
char	constrLabelOp
NS_BOOSTSPIRIT::rule< ScannerT >	content
int	curEdgeFromID
std::string	curEdgeLabel
int	curEdgeToID
int	curNodeID
std::string	curNodeLabel
MoleculeComponent::RingFragmentList	curRingFragmentList
std::string	curRingFragmentTypeString
NS_BOOSTSPIRIT::rule< ScannerT >	edge
boost::property_map < MoleculeComponent::PatternGraph, PropEdgeLabel >::type	edgeLabel
	Access to the edge label property_map of g2fill to set edge labels. More...
NS_BOOSTSPIRIT::rule< ScannerT >	molcomp
	the rules to be parsed More...
NS_BOOSTSPIRIT::rule< ScannerT >	node
boost::property_map < MoleculeComponent::PatternGraph, PropNodeLabel >::type	nodeLabel
	Access to the node label property_map of toFill to set node labels. More...
MapIntSizeT	nodeMapping
NS_BOOSTSPIRIT::rule< ScannerT >	ringFragment
MoleculeComponent &	toFill
	the molecule component to be filled More...

Detailed Description

template<typename ScannerT>
struct ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >

Definition at line 140 of file MoleculeComponent_GML_grammar.hh.

Member Enumeration Documentation

template<typename ScannerT >

enum ggl::chem::MoleculeComponent_GML_grammar::definition::WhatList

protected

Enumerator
Fill_constrAdj_NL
Fill_constrAdj_EL
Fill_constrLabel_NL
Fill_compIDs
Fill_ringFragments

Definition at line 187 of file MoleculeComponent_GML_grammar.hh.

Constructor & Destructor Documentation

template<typename ScannerT >

ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::definition

(

const MoleculeComponent_GML_grammar &

self

)

Construction of the GML BNF grammar rules to parse a MoleculeComponent

Parameters

self	access to the calling grammar

Member Function Documentation

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::clear_toFill ( void  )

protected

Resets toFill to enable the detection of missing information within final_checks()

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::final_checks ( void  ) throw (std::invalid_argument)

protected

Performs final checks on toFill to ensure that the parse was correct

Exceptions

std::invalid_argument

in case a check fails

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::insert_to_list ( WhatList  list )

protected

Inserts a string into a given string set

Parameters

list	the encoding which list to be fill

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> const& ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::start

(

)

const

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::store_constrAdj ( void  )

protected

Stores a node adjacency constraint of the MoleculeComponent

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::store_constrLabel ( void  )

protected

Stores a node label constraint of the MoleculeComponent

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::store_edge ( void  ) throw (std::invalid_argument)

protected

Stores an edge of the MoleculeComponent pattern graph.

Exceptions

std::invalid_argument

in case a check fails

template<typename ScannerT >

void ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::store_node ( void  ) throw (std::invalid_argument)

protected

Stores a node of the MoleculeComponent pattern graph.

Exceptions

std::invalid_argument

in case a check fails

Field Documentation

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::compIDs

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

MC_MC_NodeAdjacency ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::constrAdj

protected

Definition at line 182 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

char ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::constrAdjOp

protected

Definition at line 183 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::constrainAdjacency

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::constrainLabel

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

MC_MC_NodeLabel ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::constrLabel

protected

Definition at line 184 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

char ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::constrLabelOp

protected

Definition at line 183 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::content

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

int ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curEdgeFromID

protected

Definition at line 178 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

std::string ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curEdgeLabel

protected

Definition at line 179 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

int ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curEdgeToID

protected

Definition at line 178 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

int ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curNodeID

protected

Definition at line 178 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

std::string ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curNodeLabel

protected

Definition at line 179 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

MoleculeComponent::RingFragmentList ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curRingFragmentList

protected

Definition at line 185 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

std::string ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::curRingFragmentTypeString

protected

Definition at line 180 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::edge

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

boost::property_map< MoleculeComponent::PatternGraph, PropEdgeLabel>::type ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::edgeLabel

protected

Definition at line 165 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::molcomp

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::node

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

boost::property_map< MoleculeComponent::PatternGraph, PropNodeLabel>::type ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::nodeLabel

protected

Definition at line 161 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

MapIntSizeT ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::nodeMapping

protected

the mapping of node IDs in the GML notation and their corresponding node IDs in the created pattern graph

Definition at line 169 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

NS_BOOSTSPIRIT::rule<ScannerT> ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::ringFragment

protected

Definition at line 173 of file MoleculeComponent_GML_grammar.hh.

template<typename ScannerT >

MoleculeComponent& ggl::chem::MoleculeComponent_GML_grammar::definition< ScannerT >::toFill

protected

Definition at line 157 of file MoleculeComponent_GML_grammar.hh.

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The documentation for this struct was generated from the following file:

• src/ggl/chem/MoleculeComponent_GML_grammar.hh