Time

Sunday, 12 Feb 2023 - Friday, 17 Feb 2023

Topics

"Computational Biology, Computational Mathematics, Theoretical Biology, Bioinformatics, Biological Networks"

Registration Fee

300,- € (double room) / 400,- € (single room)

Available AV equipment

black board, overhead projector, beamer, laptop (linux) network, internet access via Wlan

Participants

• Institute of Theoretical Chemistry (University of Vienna)
• Department of Bioinformatics (University of Leipzig)
• Chair of Bioinformatics (University of Freiburg)
• Center for non-coding RNA in Technology and Health (RTH) (University of Copenhagen)
• RNA Bioinformatics and High-Throughput Analysis Group (Friedrich Schiller University Jena)
• and guests (by invitation only).

Location(s)

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Registration

Program

Find the Program calendar here.

Find the pdf version of the Program here.

• Sun 0
• Mon 10
• Tue 14
• Wed 3
• Thu 13
• Fri 6
• All 46

Arrival and Get Together at the Villa 12 Feb 20235pmVilla Plemlj

Opening Session 13 Feb 202311amHotel Astoria

Session Chair: Ivo Hofacker
Slides	Speaker	Talk Title
	Ivo Hofacker	Welcome notes and dinner planning

Computational Biology / RNA Structure 13 Feb 20203pmHotel Astoria

Session Chair: Stephan Bernhart
Slides	Speaker	Talk Title
	Gabor Balogh	PEVO basket trial, combining immunotherapy with an epidrug in squamous cell carcinomas
	Maximilian Feussner	CRISPR-Cas and associated RNA secondary structures
	Thomas Spicher	Computatonal estmation of energy parameters
	Yuliia Varenyk	The effect of modified nucleotides on secondary structure prediction in tRNA
	Maria Waldl	RNA-RNA interaction dynamics
	Hua-Ting Yao	Salt concentration correction in ViennaRNA package

Graph Theory 13 Feb 20208pmHotel Astoria

Session Chair: Daniel Merkle
Slides	Speaker	Talk Title
	Wilfried Imrich	Approximate Graph Products
	Nino Bašić	Nut graphs are not edge transitive
	Tomaž Pisanski	On vertex-transitive nut graphs that are notcirculant graphs
	Sandhya Thekkumpadan Puthiyaveedu	k-Median Graphs

Phylogeny / Transcriptomics 14 Feb 20233pmHotel Astoria

Session Chair: Jan Gorodkin
Slides	Speaker	Talk Title
	Ben Luis Hack	A quartet-based approach to infer phylogenetically informative characters from phenotypic data
	Vivian Brandenburg	A quartet-based approach to inferphylogenetically informative characters from phenotypic data
	Franziska Reinhardt	Evolution of Neuropeptide Y/RFamide-likereceptors in Nematodes
	Elisa Israel	Evolution of the CCA-adding Enzyme in early-branchingMetazoa
	Jannes Spangenberg	Magnipore: Differential single nucleotide changesof ONT signals
	Daria Meyer	DNA methylation analysis using Nanopore sequencing
	Robert Schwarz	Locus-specific expression analysis of TransposableElements
	Christiane Gärtner	The impact of methylation patterns in lymphoma onallele-specific expression

Graph Theory / Cheminfo 14 Feb 20238pmHotel Astoria

Session Chair: Peter Stadler
Slides	Speaker	Talk Title
	Daniel Merkle	TACsy : Training Alliance for Comput-ational SystemsChemistry
	Nora Beier	Atom Transition Networks for Atom Tracing
	Casper Asbjørn Eriksen	A Petri-Net Based Framework for Atom-Tracingin Chemical Networks
	Nico Domschke	Synthesizability of molecules
	Marcos Laffitte	Comparison of Atom Maps
	Akbar Davoodi	An Application of Graph Products in Rule Inference

Genomics / Other 15 Feb 20238pmHotel Astoria

Session Chair: Sven Findeiß
Slides	Speaker	Talk Title
	Muriel Ritsch	Nonretroviral RNA viruses integrated into the humangenome
	Tycho Kirchner	Bashing irreproducibility with shournal
	Axel Mosig	Theory is Dead! Long Live Theory!

Graph Theory 16 Feb 20233pmHotel Astoria

Session Chair: Josef Leydold
Slides	Speaker	Talk Title
	Elina Wiechens	Promoters revisited
	Lena Gladbach	Bubble Structures in Digraphs
	Annachiara Korchmaros	Quasi Best Match Graphs
	Bruno Schmidt	Directed Permutation Graphs
	Carsten R. Seemann	Nesting of Polygons
	Mehmet Aziz Yirik	CORENET: Complex chemical reaction networks for breakthrough scalable reservoir computing
	Christoph Flamm	Randomization of chemical reaction networks

Bioinformatics 16 Feb 20238pmHotel Astoria

Session Chair: Ivo Hofacker
Slides	Speaker	Talk Title
	Konstantin Riege	Bashbone: NGS Bash library
	Shahram Saghaei	VirJenDB: the virus genome database based at FSUJena
	Carmen Bruckmann	Automated gating of flow cytometry data
	Gabriel Lencioni Lovate	Differential analysis of RNA cross-linkedHTS reads with RNAswarm
	Sarah Krautwurst	Approaching RNA-protein interaction predictionsfrom an evolutionary perspective using co-alignments
	Ying Sun	Prediction of base editing outcomes by deep learning

Genomics 17 Feb 202310amHotel Astoria

Session Chair: Steve Hoffmann
Slides	Speaker	Talk Title
	Adrian Geissler	Screen for conserved RNA structures in cyanobacteria
	Cristian Velandia	De-novo canonical microRNA annotation: Insightsusing iterative models
	Martin Fischer	Genome regulation by tumor suppressors andoncoproteins
	Arne Sahm	Deciphering the molecular causes of exceptional agingphenomens in the animal kingdom by applying multi-omics
	Karl Kaether	Annotation-free Identification of Synteny Anchors
	Thomas Gatter	Genomics on a Shoestring Budget

Further Information

Find detailed information here.

Registered Participants