Time

Sunday, 11 Feb 2018 - Sunday, 18 Feb 2018

Topics

"Computational Biology, Computational Mathematics, Theoretical Biology, Bioinformatics, Biological Networks"

Registration Fee

280,- € (double room) / 380,- € (single room)

Available AV equipment

black board, overhead projector, beamer, laptop (linux) network, internet access via Wlan

Participants

• Institute of Theoretical Chemistry (University of Vienna)
• Department of Bioinformatics (University of Leipzig)
• Chair of Bioinformatics (University of Freiburg)
• Center for non-coding RNA in Technology and Health (RTH) (University of Copenhagen)
• and guests (by invitation only).

Location(s)

View Larger Map

Program

• Sun 0
• Mon 10
• Tue 14
• Wed 6
• Thu 13
• Fri 11
• Sat 7
• All 61

Arrival and Get Together at the Villa 11 Feb 20176pmVilla Plemlj

Opening Session 12 Feb 20174pmHotel Astoria

Session Chair: Ronny Lorenz
Slides	Speaker	Talk Title
	Ronny Lorenz	Welcome and opening of the TBI Winterseminar
	Manja Marz	Opening Surprise Talk
	Trudie Strauss	Word Frequency Distributions across Languages
	Nancy Retzlaff	Current projects in Digital Humanities
	Berenice Batut	Building an open, collaborative, online infrastructure for bioinformatics training
	Anne Wenzel	Navigating the landscape of RNA bioinformatics tools by ontologies

Cheminformatics, Graphs, and Networks 12 Feb 20178pmHotel Astoria

Session Chair: Jakob Lykke Anderson
Slides	Speaker	Talk Title
	Peter Severin Rasmussen	Graph Transformation, Atom Tracing, and Isotope Labelling
	Waldeyr Mendes Silva	In silico reconstruction of Copaifera multijuga Hayne terpenoids network
	Patrick Braun	Methods to randomize metabolic networks and classifiy them
	Guillermo Restrepo	News on the history of chemistry through chemical reactions
	Christoph Flamm	Electron-Bifurcation -- Life's 3rd mechanism of energy conservation

Viridae 13 Feb 20174pmHotel Astoria

Session Chair: Michael Wolfinger
Slides	Speaker	Talk Title
	Kevin Lamkiewicz	Sequencing with Raman-Spec(k)troscopy
	Emanuel Barth	Hacken Progress Update
	Clara Mueller	Transcriptional regulation in Ebola Virus: The role of VP30
	Roman Ochsenreiter	The viral world as network of RNA structures
	Daniel Desiro	Prediction and evaluation of vRNA-vRNA interaction sites between influenza A wild type and mutant vRNPs
	Sebastian Krautwurst	RNA virus full genome sequencing and haplotype reconstruction
	Florian Mock	Challenges of virus host prediction with Deep Learning

Transcriptomics 13 Feb 20178pmHotel Astoria

Session Chair: Stephan Bernhart
Slides	Speaker	Talk Title
	Anela Tosevska	Age-associated DNA methylation drift
	Adrian Geissler	Annotation and transcriptomic analysis of ncRNAs in bacterial enzyme production
	Patricia Sieber	Comparative study on alternative splicing in human-pathogenic fungi
	Konstantin Riege	de.STAIR Galaxy flavor for RNA-Seq analysis
	Martin Hoelzer	PCAGO: An interactive web service to analyze RNA-Seq data with principal component analysis
	Marie Lataretu	How to find the mitochondrial genome in fungal assemblies.
	Marcus Lechner	RNA-Seq is more than differential gene expression: Ultra short transcripts and RNA processing

RNA I 14 Feb 20178pmHotel Astoria

Session Chair: Maria Waldl
Slides	Speaker	Talk Title
	Maria Beatriz Walter Costa	Algorithms in ncRNA structure evolution
	Stefan Hammer	A novel theophylline triggered RNAseP riboswitch
	Sebastian Will	Versatile fixed-parameter tractable sampling for multi-target RNA design
	Stefan Badelt	Reaction enumeration and condensation of domain-level strand displacement systems
	Jayashree Kumar	RNA structure and genetic variation in introns: the case for the riboSplitch
	Joerg Fallmann	RNA-protein interactions on structure level

Group Photo 15 Feb 20183:30pmHotel Astoria (Entrance)

Graphs, Theory, Phylogenetics 15 Feb 20184pmHotel Astoria

Session Chair: Christian Hoener zu Siederdissen
Slides	Speaker	Talk Title
	Tomaz Pisanski	The convexity defect of benzenoids
	Nino Basic	On the Clar number of benzenoid graphs
	Nikolas Wieseke	The path of trial and tribulation towards homology based species tree inference
	Manuela Geiss	A characterization of colored Best Match Graphs
	Yangjing Long	Path relations and tree metrics
	Fabian Gaertner	The Magic of Graph Databases

Bioinformatics 15 Feb 20178pmHotel Astoria

Session Chair: Joerg Fallmann
Slides	Speaker	Talk Title
	Andre Fujita	Statistics on biological networks
	Dominik Otto	MCMC of Dynamical Systems as Uncertainty Propagation of qPCR Data
	Nadezhda Doncheva	Tissue-specific pathway comparison in mammalian organisms
	Maximilian Collatz	In silico enrichment of immunodominant proteins
	Oana Palasca	Identification of long non-coding RNAs in livestock species
	Giulia Corsi	Efficiency prediction for CRISPR Cas9
	Florian Heyl	Predicting exon splicing changes triggered by methylation profiles

Algorithms, Graphs, and Networks 16 Feb 20174pmHotel Astoria

Session Chair: Marc Hellmuth
Slides	Speaker	Talk Title
	Sarah Berkemer	1 + Greedy + DP
	Sven Dziadek	Automata and Dynamic Programming
	Lars Juhl Jensen	A crash course on STRING and Cytoscape
	Mariam Farman	MSF- Modulated Sub-path Finder
	Jakob Lykke Andersen	Canonicalization of Data Structures

RNA II 16 Feb 20178pmHotel Astoria

Session Chair: Stefan Hammer
Slides	Speaker	Talk Title
	Veerendra Gadekar	Clustering RNA secondary structures in Arabidopsis thaliana
	Jakob Hull Havgaard	DotCodeR: Alignment of RNA secondary structure dotplots
	Irene Beckmann	Identification and Classification of Peudoknots and their impact on RNA 3D structure prediction
	Bernhard Thiel	Lost in missing residues - Challenges while working with RNA structures from the Protein Data Base
	Gregor Entzian	Improve RNA secondary structure prediction with tertiary motifs
	Afaf Saaidi	Modeling of RNA structures using an integrative Multi-Probing approach

Genomics 17 Feb 20174pmHotel Astoria

Session Chair: Marcus Lechner
Slides	Speaker	Talk Title
	Halima Saker	Multidimensional segmentation of Saccharomyces cerevisiae S288C
	Sinem Suermeli	Evolution of nmtRNAs in mammals
	Jeremias Schebera	Detection of rearrangements in cancer genome with ChIP-seq data
	Daniel Wiegreffe	Introduction of the Supergenome Browser
	Maria_Waldl	Predicting RNA-RNA Interactions - A Kinetic Approach
	Marcel Winter	segemehlQC - a quality control tool for mapped NGS data
	Micha Sammeth	Automated Functional Annotation of Protein Products of Alternatively Spliced Genes
	Ronny Lorenz	Concluding Remarks

Discussion Groups 17 Feb 20178pmVilla Plemlj

Photos

Handover of the magic bottles

Berenice Batut also took some very nice pictures of Bled and the surrounding area. You can find them at her Flickr page.
Take me there

Further Information

Find detailed information here.

Registered Participants