Time

Sunday, 12 Feb 2017 - Sunday, 19 Feb 2017

Topics

"Computational Biology, Computational Mathematics, Theoretical Biology, Bioinformatics, Biological Networks"

Registration Fee

270,- € (double room) / 370,- € (single room)

Available AV equipment

black board, overhead projector, beamer, laptop (linux) network, internet access via Wlan

Participants

• Institute of Theoretical Chemistry (University of Vienna)
• Department of Bioinformatics (University of Leipzig)
• Chair of Bioinformatics (University of Freiburg)
• Center for non-coding RNA in Technology and Health (RTH) (University of Copenhagen)
• and guests (by invitation only).

Location(s)

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Program

• Sun 0
• Mon 7
• Tue 11
• Wed 4
• Thu 11
• Fri 9
• Sat 0
• All 42

Arrival and Get Together at the Villa 12 Feb 20176pmVilla Plemlj

RNA structures 13 Feb 20174pmHotel Astoria

Session Chair: Alexander Junge
Slides	Speaker	Talk Title
	Ronny Lorenz	Welcome and opening of the TBI Winterseminar
	Martin Mann	IntaRNA 2 - status and plans
	Cedric Saule	Incorporation of reactivity data in RNA secondary structure determination using Pareto optimization

Bioinformatics 13 Feb 20175pmHotel Astoria

Session Chair: Alexander Junge
Slides	Speaker	Talk Title
	Ferhat Alkan	Predicting off-targets in CRISPR technology
	Nadezhda Doncheva	Pathway and network-based comparison of mammals

Computational Sciences 13 Feb 20178pmHotel Astoria

Session Chair: Martin Mann
Slides	Speaker	Talk Title
	Wim Hordijk	Autocatalytic Sets and RNA Secondary Structure
	Rojin Kianian	Something on Computational Mass Spectrometry
	Sarah Berkemer	The archaeal halting problem

Transcriptomics 14 Feb 20176pmHotel Astoria

Session Chair: Florian Eggenhofer
Slides	Speaker	Talk Title
	Emanuel Barth	A new statistical approach to identify differential expression in small RNA-Seq data
	Anne Hoffmann	Evolution of Chemical Modifications
	Alicja Pacholewska	Annotation of lncRNA in livestock
	Lukas Bartonek	ACROs and other RNAs interacting with RNA Pol-2
	Mariam Farman	Transcriptomics of Bordetella and human phagocytes interplay
	Franziska Hufsky	Upcoming events: a festival and a founding

RNA Structure 14 Feb 20178pmHotel Astoria

Session Chair: Sebastian Will
Slides	Speaker	Talk Title
	Yann Ponty	The BRaliBase dent-a tale of benchmark design and interpretation
	Wei Wang	k best suboptimal sequence structure alignment
	Gregor Entzian	Sampling strategies to approximate RNA folding kinetics
	Juraj Michalik	Non-redundant sampling for RNA kinetics landscape reconstruction
	Maria Waldl	Conservation in kinetic folding paths

Genomics 15 Feb 20178pmHotel Astoria

Session Chair: Jörg Fallmann
Slides	Speaker	Talk Title
	Jan Zrimec	Structural representation of DNA enables characterization of regulatory regions and properties involved in antimicrobial resistance transfer
	Henrike Indrischek	G protein evolution
	Martin Hölzer	PoSeiDon: a web server for the detection of evolutionary recombination events and positive selection
	Fabian Externbrink	From Genomes to Supergenomes - How to deal with betweenness

Viruses 16 Feb 20174pmHotel Astoria

Session Chair: Markus Fricke
Slides	Speaker	Talk Title
	Andrea Tanzer	Structured Regions in Flaviviridae
	Michael Wolfinger	Probing assisted reconstruction of functional elements in Flaviviruses
	Roman Ochsenreiter	Structuredness in viral genomes
	Nelly F. Mostajo B.	Ebola and ncRNAs (preliminary results)
	Kevin Lamkiewicz	miRNAs in RNA-Viruses

Graph Theory 16 Feb 20178pmHotel Astoria

Session Chair: Nicolas Wiesecke
Slides	Speaker	Talk Title
	Tomaz Pisanski	Stable self-assembled polyhedra
	Nino Basic	A dynamic programming approach to generation of strong traces
	Stefan Mautner	Generative adversarial training on structured domains
	John Anders	Representing horizontal gene transfer events in a tree structure
	Paul Klemm	Graph-based Adjustment of Orthology-Relations
	Marc Hellmuth	From Gene Trees with HGT to Species Trees

Bioinformatics 17 Feb 20174pmHotel Astoria

Session Chair: Andrea Tanzer
Slides	Speaker	Talk Title
	Veerendra Gadekar	Prediction and identification of functional cisNATs in plants
	Dominik Otto	A Factor Extraction in RNA-Seq Analysis
	Anne Wenzel	The RNA tools registry: A community effort to catalog RNA bioinformatics resources and their relationships
	Halima Saker	Multidimensional Segmentation
	Carolin Schimmelpfennig	Detection of Gene Fusions

Bioinformatics / RNA structure 17 Feb 20176pmHotel Astoria

Session Chair: Ronny Lorenz
Slides	Speaker	Talk Title
	Peter Kerpekiev	Genomic contact matrices: tiled, scaled and served for online consumption
	Bernhard Thiel	Coarse grained RNA 3D structure prediction
	Alexander Junge	Clustering conserved, structured RNAs
	Milad Miladi	A locality glitch in established RNA free-energy models
	Ronny Lorenz	Closing remarks

Discussion Groups 18 Feb 20174pmVilla Plemlj

Discussion Groups 18 Feb 20178pmVilla Plemlj

Photos

Wim Hordijk captured a couple of very nice impressions here in Bled. You can find them at his blog.
Take me there

Further Information

Find detailed information here.

Registered Participants