Time

Sunday, 14 Feb 2016 - Sunday, 21 Feb 2016

Topics

"Computational Biology, Computational Mathematics, Theoretical Biology, Bioinformatics, Biological Networks"

Registration Fee

270,- € (double room) / 370,- € (single room)

Available AV equipment

black board, overhead projector, beamer, laptop (linux) network, internet access via Wlan

Participants

• Institute of Theoretical Chemistry (University of Vienna)
• Department of Bioinformatics (University of Leipzig)
• Chair of Bioinformatics (University of Freiburg)
• Center for non-coding RNA in Technology and Health (RTH) (University of Copenhagen)
• and guests (by invitation only).

Location(s)

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Program

• Sun 0
• Mon 8
• Tue 10
• Wed 3
• Thu 11
• Fri 7
• Sat 7
• All 46

Arrival and Get Together at the Villa 14 Feb 20166pmVilla Plemlj

RNA Structure 15 Feb 20174pmHotel Astoria

Session Chair: Stephan Bernhart
Slides	Speaker	Talk Title
	Stefan Hammer	Flexible and universal multiple target sequence design
	Roman Ochsenreiter	Reliable Prediction of Viral RNA Structures
	Dominik Steininger	RNA-RNA long range interactions in human introns
	Markus Fricke	RNA structure analysis and conserved long-range RNA-RNA interaction prediction of full viral RNA genomes
	Anne Wenzel	RIsearch2, a method for large-scale RNA-RNA interaction prediction using suffix arrays

Cheminformatics 16 Feb 20178:30pmHotel Astoria

Session Chair: Christoph Flamm
Slides	Speaker	Talk Title
	Jakob Lykke Andersen	Thermodynamic Feasibility of Pathways
	Nikolai Nøjgaard	A Generic Group Contribution Method
	Daniel Merkle	An Introduction to Counting

RNA Folding Kinetics 16 Feb 20174pmHotel Astoria

Session Chair: Ronny Lorenz
Slides	Speaker	Talk Title
	Gregor Entzian	Approximate RNA kinetics
	Mario Koestl	Kinwalker parameter space analysis
	Maria Waldl	Compiling Data Sets from RNA Kinetic Simulations
	Felix Kuehnl	The Folding Kinetics of Riboswitches
	Daniel Oser	Kinfold 2.0 - Efficient Computation of RNA Folding Kinetics

Graph Theory 16 Feb 20178pmHotel Astoria

Session Chair: Nicolas Wiesecke
Slides	Speaker	Talk Title
	Marc Hellmuth	Tree-Representations of Binary Relations
	Wilfried Imrich	Products of edge-transitive graphs

Transcriptomics 16 Feb 20179pmHotel Astoria

Slides	Speaker	Talk Title
	Emanuel Barth	not known yet
	Martin Hölzer	Evolutionary analyses of positively selected sites in the interferon-induced innate immunity factor Mx1 of bats
	Fabrizio Costa	Analytical Systems for Life Sciences at the time of Big Data

Bioinformatics afternoon in Ljubljana 17 Feb 20173pm

Slides	Speaker	Talk Title
	Michael Wolfinger + Andrea Tanzer	Rewriting the history of Zika sfRNA evolution
	Ronny Lorenz	Constraints in RNA Secondary structure prediction
	Bernhard Thiel	Integrating Cryo-EM with Coarse Grained RNA 3D Structure Prediction in ERNWIN

RNA secondary structure prediction 18 Feb 20174pmHotel Astoria

Session Chair: Sebastian Will
Slides	Speaker	Talk Title
	Jérôme Waldispühl	Exploring RNA mutation landscapes
	Teresa Müller	Improving the local alignment of LocARNA through automated parameter optimization
	Alexander Junge	RNAscClust - clustering RNAs using structure conservation and graph-based motifs
	Mariam Alshaikh	A graph kernel approach to the identification and characterisation of structured non-coding RNAs using multiple sequence alignment information
	Bernhard Thiel	A genome wide RNAz screen for structured RNA elements in mouse
	Peter Kerpedjiev	Just what the doctors ordered: online cotranscriptional folding using Dr. Transformer and Dr. Forna
	Daniel Gerighausen	RNApuzzler II

Genomics 18 Feb 20178pmHotel Astoria

Session Chair: Andrea Tanzer
Slides	Speaker	Talk Title
	Fabian Externbrink	Golden Genome
	Helene Kretzmer	DNA Methylation in Splicing Regulation
	Rohit Kolora	Hybrid assembly of non-model lizards
	Philipp Peters	Assembly of heterozygous Fodder beet

ncRNAs expression 19 Feb 20174pmHotel Astoria

Slides	Speaker	Talk Title
	Alexandre Paschoal	Exploring the knowledge of the Non-coding RNA Databases
	Ferhat Alkan	Integrated miRNA and mRNA Expression Profiling for Ulcerative Colitis
	Clemens Thölken	6S RNA: interaction & differential expression analysis
	Gero Doose	Differential Alternative Splicing - an in silico detection approach
	Anne Hoffmann	Orthologs, turn-over, and remolding of tRNAs in primates

Proteins 19 Feb 20178pmHotel Astoria

Session Chair: Ivo Grosse
Slides	Speaker	Talk Title
	Mark Doerr	How machines learn protein engineering
	Markus Lechner	Assessing the functional significance of sequence change using molecular dynamics

Transcriptomics 20 Feb 20174pmHotel Astoria

Session Chair: Irma Lozada Chavez
Slides	Speaker	Talk Title
	Ivo Grosse	Embryonic and post-embryonic hourglass patterns of plant development
	Oana Palasca	Integration of tissue expression datasets in mammalian model organisms
	Rebecca Kirsch	Towards a Comprehensive Annotation of Structured RNAs in Drosophila
	Xiaoyong Pan	Inferring disease-associated lncRNAs using expression data and disease-associated protein coding genes

Grammars and Linguistics 20 Feb 20176pmHotel Astoria

Session Chair: Christian Hoener zu Siederdissen
Slides	Speaker	Talk Title
	Sarah Berkemer	The Christmas Tree Dilemma
	Trudie Strauss	Statistical Classification of Languages
	Nancy Retzlaff	Studying Paralogs in Linguistics

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Further Information

Find detailed information here.

Registered Participants