Time

Sunday, 09 Feb 2020 - Saturday, 15 Feb 2020

Topics

"Computational Biology, Computational Mathematics, Theoretical Biology, Bioinformatics, Biological Networks"

Registration Fee

300,- € (double room) / 400,- € (single room)

Available AV equipment

black board, overhead projector, beamer, laptop (linux) network, internet access via Wlan

Participants

• Institute of Theoretical Chemistry (University of Vienna)
• Department of Bioinformatics (University of Leipzig)
• Chair of Bioinformatics (University of Freiburg)
• Center for non-coding RNA in Technology and Health (RTH) (University of Copenhagen)
• RNA Bioinformatics and High-Throughput Analysis Group (Friedrich Schiller University Jena)
• and guests (by invitation only).

Location(s)

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Program

• Sun 0
• Mon 7
• Tue 9
• Wed 11
• Thu 4
• Fri 4
• All 35

Arrival and Get Together at the Villa 9 Feb 20205pmVilla Plemlj

Opening Session 10 Feb 20204pmHotel Astoria

Session Chair: Ronny Lorenz
Slides	Speaker	Talk Title
	Ronny Lorenz	Welcome and opening of the TBI Winterseminar
	Freja Maj Kelleris	Integration of Methylation Data into a CRISPR-Cas9 Off-Target Assessment Model
	Florian Mock	How to use sequences in Deep Learning
	Celia Diezel	Nanopore sequencing or short story about long reads
	Sarah Krautwurst	Diving into RNA-protein interactions
	Lisa-Marie Barf	Pan-genomes are the new reference genomes
	Maximilian Arlt	An Introduction to the Analysis of Ancient Sequencing Data
	Muriel_Ritsch	Transcribed EVEs in Myotis lucifugus

Graph Theory 11 Feb 20204pmHotel Astoria

Session Chair: Jakob Lykke Andersen
Slides	Speaker	Talk Title
	Angel Rodriguez	Using clustering to improve a max-cut approximation algorithm.
	Carsten Seemann	Symmetrized Phylogenetic Relations
	David Schaller	Something about orthology inference using best matches
	Anahy Santiago	Connectivity on directed Hypergraphs

Bioinformatics II 8pmHotel Astoria

Session Chair: Sven Findeiss
Slides	Speaker	Talk Title
	Veerendra Gandekar	Identification of Long non-coding RNAs in Neurodegenerative diseases
	Sarah v. Loehneysen	The Prokrastinator: Combining illumina and nanopore reads for de novo genome assembly
	Carmen Bruckmann	Automated clustering for microbial cytometric data
	Sebastian Krautwurst	RNA methylation calling with nanopore sequencing
	Christiane Gaertner	SlaPPy: The thing you want to do with oxford nanopore!

Group Photo 12 Feb 20203:30pmHotel Astoria (Entrance)

RNA I 12 Feb 20204pmHotel Astoria

Session Chair: Stephan Bernhart
Slides	Speaker	Talk Title
	Lucas Vieira	Non-Coding RNAs in colorectal cancer: a bioinformatics perspective
	Tobias Hagemann	Predicting ncRNA candidates in smallRNA-seq data
	Kevin Lamkiewicz	Reducing haystacks to needles: Comparative Genomics based on viral clusters
	Daniel Desiro	Flexible RNA-RNA interactions in influenza A virus
	Vivian Brandenburg	Transcriptome-wide structure probing with Lead-Seq
	Maria Waldl	Kinetics of RNA-RNA Interactions
	Irene Beckmann	Constrained folding simulations of RNA-RNA Interaction in 3D

RNA II 12 Feb 20208pmHotel Astoria

Session Chair: Sebastian Will
Slides	Speaker	Talk Title
	Julia Wielach	Machine learning for RNA structure prediction
	Hua-Ting Yao	Exponentially Few RNA Structures are Designable
	Yann Ponty	Counting tree alignments and algorithmic consequences
	Peter Stadler	Bi-Alignment

Cheminformatics 13 Feb 20208pmHotel Astoria

Session Chair: Christoph Flamm
Slides	Speaker	Talk Title
	Philipp Honegger	Computational Spectroscopy of Reverse Micelles
	Bojana Ristivojcevic	Graph Rewrite Rule Database
	Mikkel Pilegaard	Graph Transformations in an Enzymatic Context
	Sarah Berkemer	Odonomics

Transcriptomics 14 Feb 20204pmHotel Astoria

Slides	Speaker	Talk Title
	Dominik Otto	Bayesian RNA-Seq Deconvolution
	John Anders	Mapping mass spectra onto a genome
	Marie Lataretu	Comparative mutli-tissue virus-host transcriptomics with Nextflow
	Natasha Jorge	Differentially expressed transcript regions in Alzheimer's disease

Photos

Further Information

Find detailed information here.

Registered Participants