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TBI WORKING PAPERS 2001

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TBI Working Papers are usually works in progress or papers submitted for publication in refereed scientific journals. They contain accounts of the scientific work of the author(s) and do not necessarily represent the views of the TBI.


©NOTICE: All papers are copyrighted by the authors; revised versions that appear in print are copyrighted by the publication in which each appears. If you would like to use all or a portion of any paper, please contact the author.


01-pks-006 [Abstract] [Postscript] [PDF]
Evolutionary biotechnology - From ideas and comcepts to experiments and computer simulation
Peter Schuster
Directed Molecular Evolution of Proteins
Susanne Brakmann and Kai Johnsson, editors
chapter 2, pages 5-28, Wiley -VCH, Weinheim, DE (2002)

01-pks-005 [Abstract] [PDF]
The Origin and Processing of Biological Information
Peter Schuster
English Translation of
Origine ed elaborazione delle informazioni biologiche
Peter Schuster
In: Andrea Turchi, editor
Frontiere della vita. Volume Primo: All'origine della vita.
Parte primo: Origine ed evoluzione della vita
pages 313-331, Rome, Italy (1998)
Instituto della Enciclopedia Italiano

01-pks-004 [Abstract] [Postscript] [PDF]
Ursprung des Lebens und Evolution von Molekülen
Peter Schuster
In: Paul Weingartner, editor
Evolution als Schöpfung?
Ein Streitgespräch zwischen Philosophen, Theologen und Naturwissenschaftlern
pages 219-258,Verlag W.Kohlhammer, Stuttgart, DE (2001)

01-pks-003 [Abstract] [Postscript] [PDF]
Evolution in silico and in vitro: The RNA model
Peter Schuster
Biol.Chem., 382:1301-1314 (2001)
01-pks-001 [Postscript] [PDF]
Mathematical Challenges from Molecular Evolution
Peter Schuster
Mathematics Unlimited - 2001 and Beyond
Björn Enquist and Wilfried Schmid, editors
pages 1019-1038, Springer Verlag, Berlin (2001)

01-pfs-017 [Abstract] [Postscript] [PDF]
Higher Separation Axioms in Generalized Closure Spaces
Bärbel M. R. Stadler, Peter F. Stadler

submitted (2001)

01-11-067 [Abstract] [Postscript] [PDF]
Secondary Structure Prediction for Aligned RNA Sequences
Ivo L. Hofacker, Martin Fekete, Peter F. Stadler
J.Mol.Biol. 319: 1059-1066 (2002)

01-pfs-015 [Abstract] [Postscript] [PDF]
Glassy states in a shaken sandbox
Peter F. Stadler, Anita Mehta, Jean-Marc Luck
Adv. Complex Syst. 4: 429-439 (2001).
Presented at the research workshop on Challenges in Granular Physics, ICTP Trieste, Italy, Aug 07-11 (2001).

01-pfs-014 [Abstract] [Postscript] [PDF]
[Software]
A note On Minimum Path Bases
Petra M. Gleiss, Josef Leydold, Peter F. Stadler
Presented at the conference Recent Trends in Graph Theory, Algebraic Combinatorics, and Graph Algorithms, Bled (Slovenia) Sep 24-27 2001.

01-10-056 [Abstract] [Postscript] [PDF]
Circuit Bases of Strongly Connected Digraphs
Petra M. Gleiss, Josef Leydold, Peter F. Stadler
Discussiones Math.: Graph Th. in press (2002).
Presented at the conference Recent Trends in Graph Theory, Algebraic Combinatorics, and Graph Algorithms, Bled (Slovenia) Sep 24-27 2001.

01-09-053 [Abstract] [Postscript] [PDF]
[Software]
Barrier Trees of Degenerate Landscapes
Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler, Michael T. Wolfinger
Z.Phys.Chem. 216: 155-173 (2002).

01-09-052 [Abstract] [Postscript] [PDF]
Evolution in Systems of Ligation-Based Replicators
Bärbel M. R. Stadler, Peter F. Stadler, Peter R. Wills
Z.Phys.Chem., 216: 21-33 (2002).

01-08-044 [Abstract] [Postscript] [PDF]
Minimum Cycle Bases of Product Graphs
W. Imrich, P.F. Stadler
Australasian J. Comb. 26: 233-244 (2002).

01-08-004 [Abstract] [Postscript] [PDF]
Conserved RNA Secondary Structures in Picornaviridae Genomes
C. Witwer, S. Rauscher, I.L. Hofacker, P.F. Stadler
Nucl. Acids Res. 29: 5079-5089 (2001).

01-pfs-007 [Abstract] [Postscript] [PDF]
Generalized Topological Spaces in Evolutionary Theory and Combinatorial Chemistry
B.M.R. Stadler, P.F. Stadler
J. Chem. Inf. Comput. Sci. 42: 577-585 (2002).
Supplemental Material
Basic Properties of Filter Convergence Spaces [Postscript] [PDF]
Basic Properties of Closure Spaces [Postscript] [PDF]

01-06-034 [Abstract] [Postscript] [PDF]
Fractal geometry of spin-glass models
J.F. Fontanari, P.F. Stadler
J.Phys.A:Math.Gen. 35: 1509-1516 (2002).

01-pfs-005 [Abstract] [Postscript] [PDF]
Relevant Cycles in Chemical Reaction Network
Petra M. Gleiss, P.F. Stadler, A. Wagner, D.A. Fell
Adv. Complex Systems 4:207-226 (2001).

01-pfs-004 [Abstract] [Postscript] [PDF]
Fitness Landscapes
Peter F. Stadler
In: M. Lässig and A. Valleriani (eds.): Biological Evolution and Statistical Physics, Springer, Berlin, 2002, pp. 187-207

01-03-013 [Abstract] [Postscript] [PDF] [cond-mat/0103076]
Shaking a Box of Sand
Peter F. Stadler, Anita Mehta, Jean-Marc Luck
Europhys. Letters, 57: 46-52 (2002).

01-03-014 [Abstract] [Postscript] [PDF]
Combinatorial Landscapes
Christian M. Reidys Peter F. Stadler
SIAM Review 44: 3-54 (2002).

TUM-010_05001 [Abstract] [Postscript] [PDF]
Some Properties of Robinson Graphs
Oliver Bastert, Dan Rockmore, Peter F. Stadler, Gottfried Tinhofer

01-02-011 [Abstract] [Postscript] [PDF]
Recombination Spaces, Metrics, and Pretopologies
Bärbel M.R. Stadler, Peter F. Stadler, Max Shpak, Günter P. Wagner
Z. Phys. Chem 216: 217-234 (2002).

01-01-006 [Abstract] [Postscript] [PDF]
Landscapes on Spaces of Trees
Oliver Bastert, Dan Rockmore, Peter F. Stadler, Gottfried Tinhofer
Appl. Math. Comput. 131: 439-459 (2002).

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Ivo Hofacker, <ivo@tbi.univie.ac.at>
Institut für theoretische Chemie, Währingerstr. 17, A-1090 Wien, Austria na no na net !

Last modified: 2007-08-22 12:37:23 xtof