H/ACA snoRNA candidates

Cluster Location Known Gene Known RNA EST CDS Pred. Structure From To Str. N Length ID SCI z P
30696 chr14 GARNL1 No No No 59770 ..756 ..897 - 6 150 69.37 0.61 -1.83 0.969698
59768 ..756 ..897 + 6 150 69.37 0.52 -2.09 0.978109
31319 chr14 No No No No 60823 ..155 ..273 - 5 120 76.85 0.69 -2.16 0.980469
60825 ..195 ..312 - 5 120 72.96 0.58 -1.61 0.670695
60821 ..155 ..273 + 5 120 76.85 0.61 -1.7 0.680907
17698 chr11 DEPC-1 No Yes No 35954 ..3889 ..4008 - 4 120 83.31 0.8 -2.26 0.962065
35956 ..3929 ..4048 - 4 120 86.96 0.81 -1.83 0.827552
35955 ..3929 ..4048 + 4 120 86.96 0.69 -1.66 0.609943
105502 chr9 IARS No Yes No 189483 ..300 ..438 - 5 160 74.12 0.81 -1.84 0.992209
189479 ..300 ..438 + 5 160 74.12 0.55 -1.79 0.791881
10861 chr10 No No No No 23825 ..167 ..287 - 5 120 83.42 0.7 -2.45 0.945628
23822 ..167 ..287 + 5 120 83.42 0.67 -2.61 0.953591
23829 ..247 ..367 + 5 120 87 0.75 -1.75 0.698718
54425 chr2 LRRTM4 No Yes No 103351 ..133 ..266 - 4 133 82.96 0.77 -2.06 0.912504
110520 chrX AB095942 TF24373 Mus musculus (fantom2) Yes No 198941 ..411 ..531 + 4 120 86.81 0.8 -2.28 0.947721
198947 ..571 ..687 - 4 120 80.99 0.43 -3.18 0.590603
198942 ..451 ..571 - 4 120 89.58 0.78 -1.39 0.5
16166 chr11 RPL27A No Yes No 33298 ..564 ..689 + 5 126 76.82 0.9 -2.47 0.995881
81398 chr5 ZBED3 snoRNA Yes No 147067 ..013 ..151 - 4 142 78.78 0.68 -2.19 0.964369
6111 chr1 No No No Yes 15067 ..224 ..343 + 4 120 83.31 0.82 -4.14 0.999015
15062 ..184 ..303 + 4 120 83.43 0.76 -4.18 0.998564
15064 ..184 ..303 - 4 120 83.43 0.67 -4.45 0.995832
15072 ..263 ..383 + 4 120 85.28 0.74 -1.92 0.821672
15070 ..224 ..343 - 4 120 83.31 0.73 -3.74 0.998004
37985 chr16 No No Yes No 72770 ..411 ..534 - 4 129 80.7 0.88 -2.08 0.969978
107113 chr9 MAPKAP1 TF16502 Mus musculus (fantom2) Yes No 192497 ..083 ..186 - 5 118 77.8 0.47 -2.01 0.746031
192506 ..265 ..384 + 5 120 88.94 0.68 -2.38 0.687655
192504 ..226 ..345 + 5 119 93.78 0.86 -2.48 0.99804
192509 ..265 ..384 - 5 120 88.94 0.72 -2.69 0.923616
192510 ..305 ..409 - 5 116 85.74 0.68 -1.74 0.550354
192501 ..146 ..265 - 6 120 90.08 0.89 -1.46 0.709346
192496 ..083 ..186 + 5 118 77.8 0.48 -2.06 0.807773
192505 ..226 ..345 - 5 119 93.78 0.84 -2.04 0.98162
34253 chr15 No No Yes No 65907 ..574 ..693 - 5 119 91.6 0.91 -1.66 0.975588
65908 ..614 ..733 + 5 119 92.94 0.89 -2.88 0.999861
65909 ..614 ..733 - 5 119 92.94 0.88 -3.62 0.999906
776 chr1 PAX7 No Yes No 4875 ..617 ..736 + 4 120 78.15 0.74 -2.17 0.979236
4873 ..577 ..696 + 4 120 79.94 0.69 -1.68 0.663136
37613 chr15 No No Yes No 72116 ..443 ..558 - 4 120 83.97 0.69 -2.29 0.918584
72115 ..443 ..558 + 4 120 83.97 0.74 -2.86 0.988432
72120 ..483 ..598 - 4 120 83.83 0.52 -2.96 0.698552
72118 ..483 ..598 + 4 120 83.83 0.69 -2.53 0.957392
72122 ..519 ..638 + 4 120 83.54 0.65 -3.22 0.986809
72123 ..519 ..638 - 4 120 83.54 0.64 -3.3 0.987041
51115 chr2 ODC1 No Yes No 97436 ..433 ..573 - 4 140 86.31 0.82 -2.07 0.916609
81645 chr5 MGC23909 TF22826 Mus musculus (fantom2) Yes No 147487 ..781 ..911 - 4 132 86.39 0.93 -3.62 0.998909
37959 chr16 BC028232 No Yes No 72717 ..182 ..309 + 4 129 85.08 0.91 -1.99 0.947563
25144 chr12 No No No No 50139 ..150 ..269 + 4 120 85.81 0.81 -2.54 0.977739
50143 ..189 ..296 - 4 120 82.38 0.7 -2.48 0.971878
50140 ..150 ..269 - 4 120 85.81 0.71 -3.08 0.976819
7144 chr1 No No Yes No 17191 ..073 ..202 - 4 130 84 0.89 -2.01 0.946814
17190 ..073 ..202 + 4 130 84 0.86 -1.48 0.630632
109608 chrX ZNF157 No Yes No 196931 ..300 ..438 + 4 139 81.79 0.73 -3.07 0.997377
196935 ..300 ..438 - 4 139 81.79 0.65 -2.08 0.842531
89324 chr6 No No Yes No 161231 ..463 ..614 + 4 152 86.28 0.73 -2.54 0.944959
161234 ..463 ..614 - 4 152 86.28 0.66 -1.86 0.650531
89326 chr6 No No Yes No 161232 ..494 ..608 + 4 115 89.68 0.72 -1.88 0.663553
161235 ..494 ..608 - 4 115 89.68 0.85 -2.27 0.960012
32842 chr14 GTF2A1 No Yes No 63414 ..794 ..933 - 4 144 89.3 0.96 -5.25 0.989924
63410 ..794 ..933 + 4 144 89.3 0.86 -4.42 0.991133
15670 chr10 No No No No 32369 ..355 ..475 + 5 120 91.58 0.91 -1.75 0.985285
32370 ..395 ..515 + 5 120 94.67 0.98 -4.49 0.999978
32373 ..435 ..555 - 5 120 93 0.85 -1.21 0.512711
32371 ..395 ..515 - 5 120 94.67 0.9 -2.05 0.997042
8537 chr1 UCHL5 TF22826 Mus musculus (fantom2) Yes No 19678 ..070 ..202 - 4 132 87.12 0.92 -3.4 0.998486
19676 ..070 ..202 + 4 132 87.12 0.85 -1.42 0.57338
6258 chr1 No No Yes No 15349 ..689 ..805 - 4 120 90.78 0.81 -2.81 0.969824
15353 ..727 ..845 - 4 120 91.36 0.81 -1.81 0.761859
15332 ..531 ..649 + 4 120 94.57 0.89 -1.96 0.889436
15339 ..611 ..727 + 4 120 91.48 0.95 -1.49 0.798337
15342 ..611 ..727 - 4 120 91.48 0.9 -2 0.944845
15328 ..491 ..611 + 4 120 92.63 0.75 -2.24 0.686705
67118 chr3 No No No No 122444 ..09928 ..10056 + 4 131 77.66 0.65 -2.02 0.920521
28132 chr13 No No No No 55253 ..481 ..600 - 5 120 93 0.84 -2.26 0.993409
55257 ..521 ..639 + 5 120 91.17 0.8 -1.76 0.841702
55261 ..521 ..639 - 5 120 91.17 0.91 -3.11 0.999957
111995 chrX LRCH2 No Yes No 201647 ..860 ..986 - 4 126 92.33 0.93 -2.2 0.978319
47135 chr18 C18orf34 No Yes No 89865 ..181 ..301 + 5 120 92.92 0.83 -2.16 0.987394
89867 ..181 ..301 - 5 120 92.92 0.8 -1.93 0.896913
89859 ..061 ..181 - 5 120 97.32 0.94 -1.91 0.995194
89860 ..101 ..221 + 5 120 97.67 0.95 -1.97 0.996399
89856 ..031 ..141 - 5 120 90.82 0.93 -2.12 0.998927
89854 ..031 ..141 + 5 120 90.82 0.82 -1.91 0.940279
89858 ..061 ..181 + 5 120 97.32 0.91 -2.11 0.9956
86084 chr5 RANBP17 No Yes No 155593 ..449 ..568 - 5 120 93.97 0.89 -1.22 0.677345
155585 ..409 ..529 - 5 120 95 0.93 -2.24 0.999509
155577 ..369 ..489 + 4 120 92.78 0.9 -2.51 0.985892
155583 ..409 ..529 + 5 120 95 0.84 -1.37 0.625629
73982 chr4 No No No No 134560 ..808 ..928 - 5 120 92.83 0.83 -2.7 0.997845
Stefan Washietl
Tue Mar 15 09:57:00 2005