Selection of high scoring structures

Cluster Location Known Gene Known RNA EST CDS Pred. Structure From To Str. N Length ID SCI z P
64435 chr22 RANBP1 No Yes No 1390 ..478 ..534 + 6 59 72.53 0.72 -4.53 0.976224
58300 chr2 TTN No Yes No 110235 ..697 ..767 - 6 84 70.02 0.76 -4.04 0.969764
25547 chr12 SLC25A3 No Yes No 50841 ..6038 ..6127 + 6 96 67.3 0.73 -4.83 0.932894
46558 chr18 No snoRNA Yes No 88767 ..5953 ..6076 - 6 127 76.07 0.86 -3.39 0.973
40703 chr16 No No Yes No 77598 ..350 ..456 - 5 114 81.42 0.74 -3.01 0.996044
111626 chrX DSIPI No Yes Yes 200982 ..229 ..342 + 4 120 76.58 0.72 -3.12 0.999851
16165 chr11 RPL27A snoMBI-28 Yes No 33300 ..345 ..478 + 6 145 71.55 0.74 -4.17 0.977388
2793 chr1 No No Yes No 9172 ..796 ..909 - 5 120 76.86 0.75 -3.15 0.999314
14402 chr10 No No Yes No 30294 ..2999 ..3111 - 4 120 81.29 0.71 -4.23 0.99948
85396 chr5 No No Yes No 154257 ..251 ..360 + 6 120 71.66 0.81 -3.22 0.983396
14410 chr10 No No No No 30266 ..11 ..65 + 4 55 82.21 0.71 -3.48 0.9983
15949 chr11 AF318382 No Yes No 32885 ..784 ..901 - 4 120 78.79 0.88 -6.25 0.99008
32876 ..747 ..863 - 4 120 76.59 0.79 -5.64 0.999264
94273 chr7 TBRG4 snoRNA Yes No 169765 ..742 ..881 - 5 148 75.54 0.8 -3.36 0.999451
24281 chr12 CTDSP2 mir-26 Yes No 48744 ..659 ..744 - 6 91 70.55 0.91 -6.1 0.944253
34519 chr15 No No No No 66433 ..744 ..857 - 6 113 79.17 0.79 -3.36 0.972751
87789 chr6 No No Yes No 158500 ..687 ..806 - 4 120 71.25 0.72 -3.63 0.999993
80849 chr5 No No No No 146126 ..149 ..213 + 4 64 82.77 0.77 -3.08 0.996831
83565 chr5 No No Yes No 150838 ..238 ..355 - 4 120 81.43 0.84 -3.41 0.99934
46245 chr18 COLEC12 No Yes No 88278 ..384 ..444 + 4 60 83.29 1.01 -3.34 0.999341
113047 chrX No No No No 203594 ..338 ..436 - 6 114 66.86 0.82 -4.45 0.90314
36252 chr15 BRUNOL6 No Yes No 69534 ..046 ..122 - 4 77 79.61 0.73 -3.19 0.999405
86486 chr5 HNRPH1 No Yes No 156259 ..270 ..379 - 5 120 78.27 0.79 -3.25 0.9991
97787 chr7 PTPRN2 No Yes No 176077 ..247 ..336 - 4 89 73.86 0.9 -3.41 0.999925
49158 chr19 No No No No 93520 ..707 ..826 - 4 120 71.39 0.72 -3.37 0.999989
44583 chr17 CACNA1G No Yes No 85218 ..179 ..297 + 4 120 83.29 0.87 -3.34 0.998713
64035 chr21 SOD1 snoRNA Yes No 717 ..501 ..660 + 5 166 81.46 0.87 -3.82 0.999422
11959 chr10 C10orf64 No No Yes 25703 ..107 ..203 + 4 98 81.54 0.82 -3.22 0.99894
77493 chr4 No No Yes No 140505 ..167 ..286 - 4 120 81.25 0.77 -3.24 0.998951
94271 chr7 No ACA9 snoRNA Yes No 169761 ..219 ..349 - 5 130 81.2 0.9 -3.04 0.998264
38888 chr16 No No No No 74289 ..208 ..280 + 4 91 74.69 0.82 -3.76 0.999976
74287 ..170 ..270 + 4 120 77.81 0.84 -3.33 0.99983
76224 chr4 MGC48628 No Yes No 138355 ..694 ..814 - 4 120 80.42 1.04 -4.83 0.997292
138351 ..654 ..774 - 4 120 85 1 -5.91 0.984137
61411 chr20 PAK7 No Yes No 115847 ..788 ..908 - 4 120 79.55 0.79 -3.19 0.999517
99450 chr8 TOX No Yes No 178904 ..158 ..278 - 5 120 79.08 0.72 -4.7 0.999545
22010 chr12 NET-5 No Yes No 44295 ..866 ..974 + 4 120 78.5 0.71 -3.62 0.999875
80088 chr5 No No Yes No 144847 ..00 ..63 - 4 66 73.71 0.92 -3.32 0.999909
84325 chr5 No No No No 152328 ..39 ..92 + 4 53 79.56 0.72 -3.23 0.999473
23269 chr12 DKFZp434K2435 No Yes No 46546 ..848 ..941 - 5 96 74.84 0.73 -3.02 0.999488
33384 chr14 No No No No 64338 ..162 ..281 - 5 120 76.21 0.77 -3.37 0.999533
78719 chr4 No No Yes No 142560 ..586 ..680 - 5 108 70.38 0.72 -4.17 0.999539
85594 chr5 No No No Yes 154570 ..12 ..73 - 4 64 83.2 0.95 -3.13 0.998899
26234 chr12 No No No No 52002 ..044 ..102 + 4 58 84.77 0.98 -3.46 0.999286
45900 chr17 RAB37 No Yes No 87670 ..699 ..752 - 4 55 79.01 0.81 -4.7 0.999809
101221 chr8 OXR1 No Yes No 181889 ..050 ..116 + 5 74 74.72 0.78 -5.64 0.995656
16237 chr11 AMPD3 No Yes No 33426 ..08 ..78 + 4 73 81.84 0.82 -3.88 0.999507
24036 chr12 No No No No 48186 ..785 ..902 + 4 120 81.37 0.74 -3.22 0.998609
44330 chr17 No mir-10 Yes No 84668 ..203 ..316 - 6 120 74.65 0.96 -3.8 0.93996
61845 chr20 SNX5 snoRNA Yes No 116615 ..450 ..570 - 4 120 83.82 0.93 -3.02 0.998348
53790 chr2 No U19 Yes No 102182 ..487 ..605 + 4 120 79.52 0.86 -3.68 0.999776
37931 chr16 No No No No 72678 ..079 ..167 + 4 88 80.3 0.76 -3.16 0.999185
54036 chr2 No No No No 102611 ..197 ..260 - 4 63 84.13 0.79 -3.12 0.995789
38941 chr16 AY358206 No Yes No 74374 ..8872 ..9035 - 4 163 78.03 0.72 -3.07 0.999625
113776 chrX GABRA3 No Yes No 204954 ..615 ..747 - 5 143 76.57 0.81 -5.61 0.996035
65190 chr22 No TF32710 Mus musculus (fantom2) No No 2774 ..037 ..150 + 4 115 81.34 0.79 -4.18 0.999622
16746 chr11 FLJ90119 No Yes No 34330 ..135 ..241 + 4 120 77.65 0.72 -3.05 0.999664
24582 chr12 DYRK2 No Yes No 49260 ..8987 ..9105 + 5 120 82.83 0.83 -3.26 0.998652
39159 chr16 No TF32222 Mus musculus (fantom2) Yes No 74842 ..088 ..198 + 4 120 77.97 0.86 -3.76 0.999892
63519 chr20 C20orf166 mir-1 Yes No 119689 ..1946 ..2030 + 6 86 82.51 1.04 -4.94 0.993105
109490 chrX No No No No 196718 ..03 ..93 - 4 90 83.86 0.73 -3.69 0.997038
72139 chr3 No No Yes No 131417 ..2905 ..3002 + 4 107 79.97 0.77 -3.57 0.999733
70083 chr3 No No Yes No 127697 ..802 ..921 + 4 120 83.96 0.81 -3.03 0.995867
49166 chr19 MAP2K7 No Yes No 93501 ..4994 ..5070 + 4 82 79.32 0.72 -3.76 0.999836
98003 chr8 BC065837 No Yes No 176444 ..025 ..142 - 4 120 80.22 0.79 -3.59 0.999708
61099 chr20 SNPH No Yes No 115235 ..094 ..210 + 4 120 75.42 0.74 -3.21 0.999941
67866 chr3 CAST No Yes No 123931 ..0971 ..1089 - 5 120 80.5 0.77 -3.08 0.997793
52140 chr2 ALK No No No 99274 ..070 ..155 + 4 85 81.37 0.87 -3.07 0.99874
80020 chr5 ZFR No Yes No 144766 ..412 ..527 - 6 120 73.02 0.73 -7.45 0.911456
13717 chr10 SORBS1 No Yes No 28812 ..796 ..895 - 4 105 77.24 0.77 -3.22 0.999862
26388 chr12 No No No No 52263 ..0915 ..1035 - 4 120 84.17 0.82 -3.42 0.997995
73986 chr4 No No No Yes 134594 ..362 ..481 - 4 120 84.15 0.72 -3 0.989002
101497 chr8 No No No No 182381 ..775 ..882 - 5 120 76.84 0.74 -3.05 0.999188
7 chr1 No No Yes No 3582 ..605 ..716 - 4 112 84.23 0.87 -3.23 0.998033
2061 chr1 No No Yes No 7641 ..355 ..464 + 4 110 82.29 0.71 -3.33 0.997674
15889 chr11 No No Yes No 32811 ..4946 ..5057 - 4 112 84.23 0.87 -3.23 0.998033
18316 chr11 CHRM1 No Yes No 37206 ..750 ..858 + 4 119 74.17 0.82 -3.72 0.999978
59450 chr2 No No Yes No 112189 ..279 ..399 + 4 120 79.05 0.72 -3.04 0.999276
77311 chr4 No No Yes No 140177 ..742 ..816 + 4 74 81.53 0.98 -3.5 0.999419
92361 chr7 No No Yes No 166473 ..152 ..263 - 4 112 84.23 0.85 -3.65 0.99869
110447 chrX HDAC8 No Yes No 198749 ..31 ..95 + 4 71 80.29 0.81 -3.1 0.999133
32314 chr14 DPF3 No Yes No 62520 ..874 ..991 + 4 120 81.79 0.77 -3.47 0.999146
83596 chr5 BC030525 No Yes No 150897 ..6864 ..6984 - 4 120 81.64 0.77 -3.42 0.999119
51137 chr2 No No No No 97473 ..367 ..486 - 4 120 80.87 0.74 -3.47 0.999393
85234 chr5 No No Yes No 154005 ..7013 ..7120 - 4 107 81.62 0.86 -3.52 0.999408
109650 chrX DKFZp761A052 No Yes No 197020 ..034 ..105 - 4 73 80.96 0.89 -3.09 0.999002
111383 chrX PLP1 No Yes No 200589 ..4030 ..4150 + 4 120 81.5 0.72 -3.13 0.997945
10044 chr1 FLJ10326 mir-192 Yes No 22426 ..07 ..86 - 5 80 84.79 0.81 -3.56 0.999116
16399 chr11 MLSTD2 No Yes No 33723 ..393 ..511 + 4 120 79.13 0.73 -4.14 0.999888
5504 chr1 COL11A1 No Yes No 13969 ..20 ..82 - 5 66 77.47 0.81 -4.34 0.999404
11553 chr10 No No No No 24997 ..116 ..199 + 4 85 79.22 0.91 -3.93 0.999749
72408 chr3 No No No No 131846 ..817 ..936 + 4 120 84.2 0.73 -3.31 0.994489
101980 chr8 No No Yes Yes 183238 ..688 ..808 + 5 120 82.87 0.71 -4.13 0.9988
881 chr1 ALPL No Yes No 5055 ..010 ..129 - 4 120 82.31 0.78 -3.47 0.998914
39122 chr16 No TF32222 Mus musculus (fantom2) Yes No 74783 ..3983 ..4092 - 4 120 78.98 0.74 -3.84 0.999888
31870 chr14 GPX2 SECIS Yes No 61727 ..622 ..763 - 4 147 80.21 0.73 -3.08 0.998835
50107 chr19 No No Yes No 95344 ..761 ..877 + 4 120 82.15 0.73 -3.79 0.999124
58284 chr2 PDE11A No Yes No 110185 ..531 ..651 + 5 120 83.08 0.78 -3.01 0.995925
50608 chr19 IL4I1 No Yes No 96477 ..06 ..58 + 4 57 82.35 0.83 -3.23 0.998652
85871 chr5 SLIT3 mir-218 Yes No 155097 ..734 ..850 - 5 120 77.21 0.84 -3.49 0.999209
Stefan Washietl
Tue Mar 15 09:57:00 2005